View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2174_low_9 (Length: 288)

Name: NF2174_low_9
Description: NF2174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2174_low_9
NF2174_low_9
[»] chr1 (5 HSPs)
chr1 (155-205)||(13241629-13241679)
chr1 (156-209)||(9516445-9516498)
chr1 (240-273)||(13914464-13914497)
chr1 (240-273)||(35152727-35152760)
chr1 (13-52)||(37967103-37967145)
[»] chr4 (2 HSPs)
chr4 (155-209)||(51070652-51070706)
chr4 (243-273)||(1178058-1178088)
[»] chr8 (2 HSPs)
chr8 (155-210)||(7393487-7393542)
chr8 (243-273)||(4406057-4406087)
[»] chr5 (3 HSPs)
chr5 (240-273)||(11741914-11741947)
chr5 (240-273)||(38442464-38442497)
chr5 (241-273)||(19518004-19518036)
[»] chr7 (4 HSPs)
chr7 (155-209)||(7899755-7899809)
chr7 (243-273)||(27396630-27396660)
chr7 (243-273)||(42731816-42731846)
chr7 (243-272)||(32053144-32053173)
[»] chr3 (1 HSPs)
chr3 (243-273)||(36418085-36418115)
[»] chr2 (2 HSPs)
chr2 (243-273)||(34447814-34447844)
chr2 (243-272)||(21370600-21370629)
[»] chr6 (2 HSPs)
chr6 (243-272)||(21627714-21627743)
chr6 (245-273)||(33517537-33517565)


Alignment Details
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 13241629 - 13241679
Alignment:
Q  155 aataaataaaacacatgttaaaaataacatcttttaaatgctttatcactt 205  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  13241629 aataaataaaacacatgttaaaaataagatcttttgaatgctttatcactt 13241679  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 9516445 - 9516498
Alignment:
Q  156 ataaataaaacacatgttaaaaataacatcttttaaatgctttatcacttgtta 209  Q
    ||||||||||||||||||||||| || ||||||| |||| ||| ||| ||||||    
T  9516445 ataaataaaacacatgttaaaaaaaagatcttttgaatgttttgtcatttgtta 9516498  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 13914497 - 13914464
Alignment:
Q  240 aaagcttaaatatgtatttcatccttgtaattag 273  Q
    ||||||||||||||||||||||||||| ||||||    
T  13914497 aaagcttaaatatgtatttcatccttgcaattag 13914464  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 35152760 - 35152727
Alignment:
Q  240 aaagcttaaatatgtatttcatccttgtaattag 273  Q
    ||||||||||||||||||||||||||| ||||||    
T  35152760 aaagcttaaatatgtatttcatccttgcaattag 35152727  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 37967103 - 37967145
Alignment:
Q  13 aatatttccaataattaattac---agtatatggatgcgttga 52  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
T  37967103 aatatttccaataattaattacagtagtatatggatgcgttga 37967145  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 51070706 - 51070652
Alignment:
Q  155 aataaataaaacacatgttaaaaataacatcttttaaatgctttatcacttgtta 209  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||    
T  51070706 aataaataaaacacatgttaaaaataagatcttttgaatgttttgtcacttgtta 51070652  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 1178058 - 1178088
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||||||||    
T  1178058 gcttaaatatgtatttcatccttgtaattag 1178088  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 7393542 - 7393487
Alignment:
Q  155 aataaataaaacacatgttaaaaataacatcttttaaatgctttatcacttgttac 210  Q
    ||||||||||||||||||||||||||| ||||||| || | ||| |||||||||||    
T  7393542 aataaataaaacacatgttaaaaataagatcttttgaaagttttgtcacttgttac 7393487  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 4406087 - 4406057
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||||||||    
T  4406087 gcttaaatatgtatttcatccttgtaattag 4406057  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 11741947 - 11741914
Alignment:
Q  240 aaagcttaaatatgtatttcatccttgtaattag 273  Q
    ||||||||||||||||||||||||||||||||||    
T  11741947 aaagcttaaatatgtatttcatccttgtaattag 11741914  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 38442497 - 38442464
Alignment:
Q  240 aaagcttaaatatgtatttcatccttgtaattag 273  Q
    ||||||||||||||||||||||||||| ||||||    
T  38442497 aaagcttaaatatgtatttcatccttgcaattag 38442464  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 19518036 - 19518004
Alignment:
Q  241 aagcttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||| ||||||    
T  19518036 aagcttaaatatgtatttcatccttgcaattag 19518004  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 7899809 - 7899755
Alignment:
Q  155 aataaataaaacacatgttaaaaataacatcttttaaatgctttatcacttgtta 209  Q
    |||||||||||  ||| |||||||||| |||||||||||| ||| ||||||||||    
T  7899809 aataaataaaatgcatattaaaaataagatcttttaaatgttttgtcacttgtta 7899755  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 27396630 - 27396660
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||||||||    
T  27396630 gcttaaatatgtatttcatccttgtaattag 27396660  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 42731846 - 42731816
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||||||||    
T  42731846 gcttaaatatgtatttcatccttgtaattag 42731816  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 32053144 - 32053173
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaatta 272  Q
    ||||||||||||||||||||||||||||||    
T  32053144 gcttaaatatgtatttcatccttgtaatta 32053173  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 36418115 - 36418085
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||||||||    
T  36418115 gcttaaatatgtatttcatccttgtaattag 36418085  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 34447814 - 34447844
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||||||||    
T  34447814 gcttaaatatgtatttcatccttgtaattag 34447844  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 21370629 - 21370600
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaatta 272  Q
    ||||||||||||||||||||||||||||||    
T  21370629 gcttaaatatgtatttcatccttgtaatta 21370600  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 21627714 - 21627743
Alignment:
Q  243 gcttaaatatgtatttcatccttgtaatta 272  Q
    ||||||||||||||||||||||||||||||    
T  21627714 gcttaaatatgtatttcatccttgtaatta 21627743  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 273
Target Start/End: Original strand, 33517537 - 33517565
Alignment:
Q  245 ttaaatatgtatttcatccttgtaattag 273  Q
    |||||||||||||||||||||||||||||    
T  33517537 ttaaatatgtatttcatccttgtaattag 33517565  T

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