View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2175_high_1 (Length: 436)
Name: NF2175_high_1
Description: NF2175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2175_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 262 - 429
Target Start/End: Original strand, 2914322 - 2914493
Alignment:
| Q |
262 |
atataaaatccg-aatattagaatttagaaacaatcaagcgcgannnnnnnaaaacaacaaaattaagatgaaatcaaaccgtccaatcacacttggtaa |
360 |
Q |
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| T |
2914322 |
atataaaatccccaatattagaatttagaaacaatcaagcgcgatttttttaaaacaacaaaattaagatgaaatcaaaccgtccaatcacacttggtaa |
2914421 |
T |
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| Q |
361 |
atttacaagttata--attttcttccaaaa-atctcaatcccaaataacgctcaactaaacaacttcatctc |
429 |
Q |
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| T |
2914422 |
atttacaagttataatattttcttccaaaagatctcaatcccaaataacactcacctaaacaacttcatctc |
2914493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 2914054 - 2914137
Alignment:
| Q |
187 |
ctatcagttatcacacatgtactggaacaaaattaccgaaaattcagcaaacttaatcccaaaattgtcgcataaatataaaat |
270 |
Q |
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| T |
2914054 |
ctatcagttatcacacatgtactggaacaaaactaccgaaaattcagcaaacttaatcctaaaattgtcgcataaatataaaat |
2914137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 2913891 - 2913962
Alignment:
| Q |
20 |
attgactttgtaatttttgagggtgattctcttttgactatccaattattaagtatatttgactatctttag |
91 |
Q |
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| T |
2913891 |
attgactttgtaatttttgagggtgattctcttttgactatctaattattaagtatatttgactatccttag |
2913962 |
T |
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