View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2175_low_3 (Length: 246)

Name: NF2175_low_3
Description: NF2175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2175_low_3
NF2175_low_3
[»] chr4 (2 HSPs)
chr4 (13-246)||(30774550-30774783)
chr4 (153-246)||(35131757-35131850)
[»] chr7 (6 HSPs)
chr7 (71-242)||(8586401-8586572)
chr7 (76-246)||(8666717-8666884)
chr7 (78-242)||(8616017-8616181)
chr7 (77-237)||(3146574-3146731)
chr7 (76-180)||(8658727-8658831)
chr7 (70-137)||(8646284-8646351)
[»] chr2 (2 HSPs)
chr2 (49-180)||(16658193-16658324)
chr2 (107-183)||(16662726-16662802)
[»] chr8 (1 HSPs)
chr8 (69-139)||(43744221-43744291)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 30774783 - 30774550
Alignment:
Q  13 acctgtgaagatgacaaaaggatatggtactgctggagataaccattgcagtgtctatattaatgtttatgagggcgagagaacaagagccgtggacaac 112  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||| |||||| |||||| || |||||||    
T  30774783 acctgtgaagatgacaaaaggatatggtactgctagcgataaccattgccgtgtctctattaatgtttatgagggtgagagagcaagagtcgcggacaac 30774684  T
Q  113 aatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatg 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||    
T  30774683 aatctgctaggttcttttattctttcttgtcttccagatactcctcgtggccaacctttggatgtatgcttcactatcaacgaaaatggtatactgaatg 30774584  T
Q  213 tttctgctatggaaaaatccactggcaatatgaa 246  Q
    ||||||||||||||||||||||||||||||||||    
T  30774583 tttctgctatggaaaaatccactggcaatatgaa 30774550  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 35131850 - 35131757
Alignment:
Q  153 ctcctcgtggccatcctttggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaa 246  Q
    ||||||| ||||| ||||  ||||| || || ||||| || |||||||||||  ||| ||||||||||| |||||||||||| ||||| |||||    
T  35131850 ctcctcgcggccacccttacgatgtttgttttactatcgatgaaaatggtattttgactgtttctgctaaggaaaaatccaccggcaaaatgaa 35131757  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 8586401 - 8586572
Alignment:
Q  71 attaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctt 170  Q
    ||||| ||||||||||| |||||| |||||||    |||||||||||||| || | ||||| |||||| ||  | || ||| |||||||||| ||||| |    
T  8586401 attaaggtttatgagggtgagagagcaagagctagtgacaacaatctgcttggcttttttaatctttcgtgcgtcccgggtgctcctcgtgggcatccct 8586500  T
Q  171 tggatgtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaata 242  Q
    | || ||||||||||| || || ||||||||||| || | ||||||||| | ||||| |||| |||||||||    
T  8586501 ttgaggtatgcttcaccatcgatgaaaatggtatcctaactgtttctgcgaaggaaatatcctctggcaata 8586572  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 8666884 - 8666717
Alignment:
Q  76 tgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggat 175  Q
    |||||||||||| |||||| ||||||| |  ||||| |||||||| ||||| |||   |||  |||||||||||||   || |||||||| || |||||     
T  8666884 tgtttatgagggtgagagaccaagagctgctgacaataatctgcttggttcatttgggcttcgttgtcttccaggt---ccccgtggccagcccttggag 8666788  T
Q  176 gtatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaatatgaa 246  Q
    ||||||||  | || || ||||||||||| |||| |||| |||||| ||||| |||||| |||||||||||    
T  8666787 gtatgcttttcaattgatgaaaatggtatcctgactgttactgctagggaaatatccacaggcaatatgaa 8666717  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 8616181 - 8616017
Alignment:
Q  78 tttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatgt 177  Q
    |||||||||| |||||| |||||||    |||||||||||||| || | ||||  |||||| ||   ||| ||| ||||| ||| |||||| ||||| ||    
T  8616181 tttatgagggtgagagatcaagagctagtgacaacaatctgcttggatttttttatctttcgtgcactcctggtgctccttgtgaccatcccttggaggt 8616082  T
Q  178 atgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactggcaata 242  Q
    ||||||||| || ||||| |||||||| || | ||| ||||| | ||||||||| ||||||||||    
T  8616081 atgcttcaccatcgacgataatggtatccttactgtatctgcgaaggaaaaatctactggcaata 8616017  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 3146731 - 3146574
Alignment:
Q  77 gtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatg 176  Q
    ||||||||||| |||||| |||||||    |||||||||||||| |||||||||  ||||||| |||  ||| || ||||||| || || ||||| || |    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggttctttttgtctttct-gtc--ccaagtgctcctcgcggtcacccttttgagg 3146635  T
Q  177 tatgcttcactatagacgaaaatggtatactgaatgtttctgctatggaaaaatccactgg 237  Q
    ||||||| |||||  | |||||||| ||  | | |||||||||||  ||||||||||||||    
T  3146634 tatgctttactatcaatgaaaatggcatcttaattgtttctgctaatgaaaaatccactgg 3146574  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 8658831 - 8658727
Alignment:
Q  76 tgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggat 175  Q
    |||||| ||||| |||||| |||||||  | |||||||||||||| ||||| || |  |||||||| | ||||||| |||||||||||  ||| |||||     
T  8658831 tgtttacgagggtgagagagcaagagcgctagacaacaatctgcttggttcgttcaaactttcttgccgtccaggtgctcctcgtggcactcccttggag 8658732  T
Q  176 gtatg 180  Q
    |||||    
T  8658731 gtatg 8658727  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 8646351 - 8646284
Alignment:
Q  70 tattaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattcttt 137  Q
    ||||| |||||||||||| |||||| |||||||    |||||||||||||| |||||||||| |||||    
T  8646351 tattattgtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttaatcttt 8646284  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 16658193 - 16658324
Alignment:
Q  49 agataaccattgcagtgtctatattaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttcttgtcttcca 148  Q
    ||||||||| ||||  ||||  ||||||||||||||||| |||||| ||||||| |  ||||| |||||||| |||| ||| |  ||||||||  |||||    
T  16658193 agataaccaatgcaaagtctcaattaatgtttatgagggtgagagagcaagagctgctgacaataatctgctcggttttttcagcctttcttgcgttcca 16658292  T
Q  149 ggtactcctcgtggccatcctttggatgtatg 180  Q
    ||| ||||||| ||||| || || ||||||||    
T  16658293 ggtgctcctcggggccaacccttagatgtatg 16658324  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 16662726 - 16662802
Alignment:
Q  107 gacaacaatctgctaggttcttttattctttcttgtcttccaggtactcctcgtggccatcctttggatgtatgctt 183  Q
    ||||||||  |||| |||| |||||  |||||  |||||||| ||  ||||||||||||||| ||||||||||||||    
T  16662726 gacaacaacatgcttggtttttttaggctttccggtcttccaagtgttcctcgtggccatcccttggatgtatgctt 16662802  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 43744291 - 43744221
Alignment:
Q  69 atattaatgtttatgagggcgagagaacaagagccgtggacaacaatctgctaggttcttttattctttct 139  Q
    ||||||| ||||||||||| |||||| |||||||    |||||||||||||| |||||||||  |||||||    
T  43744291 atattaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttgctctttct 43744221  T

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