View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_1 (Length: 764)
Name: NF2176_high_1
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 655 - 750
Target Start/End: Complemental strand, 7908568 - 7908473
Alignment:
| Q |
655 |
tttgatactcactgattcatgacttgagataaacggacctgcagaatgttttggagacatttcactctatcctccgctatttgcatatcatctctg |
750 |
Q |
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| T |
7908568 |
tttgatactcactgattcatgacttgagataaacggacctgcagaatgttttggagacatttcactatatcctccgctatttgcatatcatctctg |
7908473 |
T |
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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 482 - 568
Target Start/End: Original strand, 7352841 - 7352923
Alignment:
| Q |
482 |
ttcaactaagtaatccattcatttacaaccatttgagtaagaaactatctgtgatttctaattaaacacaaaaaatagcatcaaaat |
568 |
Q |
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| T |
7352841 |
ttcaactaactaatccattcatttacaaccatttgagtaagaaacaatctctgatttc----tgaacacaaacaatagcatcaaaat |
7352923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 7908654 - 7908579
Alignment:
| Q |
20 |
acctgcacatgacttcgcaaactacnnnnnnnncaaacattgacatgttacttataaaataaaaatttcaaatgag |
95 |
Q |
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| T |
7908654 |
acctgcacatgacttcgcaaactacttttttttcgaacattgacatgttacttataaaataaaaatttcaaatgag |
7908579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 527
Target Start/End: Original strand, 7332107 - 7332139
Alignment:
| Q |
495 |
tccattcatttacaaccatttgagtaagaaact |
527 |
Q |
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| T |
7332107 |
tccattcatttacaaccatttgagtaagaaact |
7332139 |
T |
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