View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_10 (Length: 657)
Name: NF2176_high_10
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 598; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Complemental strand, 20461306 - 20460669
Alignment:
| Q |
1 |
ctgacaatttatagtaacataaaagagatagataaaatacggtgttaaatcagtgtttgaaaatttatattgtttaaatatcattgttgaatatttaaat |
100 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20461306 |
ctgacgatttatactaacataaaagagatagataaaataaggtgttgaaccagtgtttgaaaatttatattgtttaaatatcattgttgaatatttaaat |
20461207 |
T |
|
| Q |
101 |
aaaacatgaaccatgtcttacatatacaaatcaattatttcctaagctagtcttaaaacaagtcctataaatagaggtttgaaccatactacggttgcaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20461206 |
aaaacatgaaccatgtcttacagatacaaatcaattatttcctaagctagtcttaaaacaagtcctataaatagaggtttgaaccatactacggttgcaa |
20461107 |
T |
|
| Q |
201 |
acaaataaacagcattgatcatttggaaccatgaagcctacattccttaccaccctttctctgctactctttgccttagccacctactttccattagctt |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20461106 |
acaaataaacagcatcgatcatttggaaccatgaagcctacattccttaccaccctttctctactactctttgccttagccacctactttccattagctt |
20461007 |
T |
|
| Q |
301 |
ttactgaacaagtgcgtgactcaaatggaaaccctattttcttttctagtagattctatattaagccatctatatttggagctgctggtggtggagtaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20461006 |
ttactgaacaagtgcgtgactcaaatggaaaccctattttcttttctagtagattctatgttaagccatctatatttggagctgctggtggtggagtaaa |
20460907 |
T |
|
| Q |
401 |
gcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattattctgaggtcgtcaacggtctcccggtaaaatttagcactgacgctgaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20460906 |
gcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattattctgaggtcgtcaacggtctcccggtaaaatttagcactgacgctgaa |
20460807 |
T |
|
| Q |
501 |
gtttttattgatttgatatctacagacacgtcaagagtggatattgtatttccagaaaagccagagtgtgccgaatcctcgaagtggttgctgattgaag |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20460806 |
atttttattgatttgatatctacagacacgtcaagagtggatattgtatttccagaaaagccagagtgtgccgaatcctcgaagtggttgctgattgaag |
20460707 |
T |
|
| Q |
601 |
atgatttccctagaccatgggttggtattggtggtatt |
638 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20460706 |
atgatttccctagaccatgggttggtattggtggtatt |
20460669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 353 - 486
Target Start/End: Complemental strand, 24222374 - 24222241
Alignment:
| Q |
353 |
attctatattaagccatctatatttggagctgctggtggtggagtaaagcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattat |
452 |
Q |
| |
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||||||||||| |||||| || |||||||| |||||||||||| | | ||||||| | ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
24222374 |
attctatattatgccatcaatctttggagcagctggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattat |
24222275 |
T |
|
| Q |
453 |
tctgaggtcgtcaacggtctcccggtaaaattta |
486 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| |||| |
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|
| T |
24222274 |
tctgaggttgtcaatggtctgcctgtaaagttta |
24222241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 15505222 - 15505276
Alignment:
| Q |
401 |
gcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattattct |
455 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
15505222 |
gcttggtgaaacagaaaattcaacatgtccatttactgtacttcaagattattct |
15505276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 15512412 - 15512466
Alignment:
| Q |
401 |
gcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattattct |
455 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||| |
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|
| T |
15512412 |
gcttggtgaaacagaaaattcaacatgtccatttactgtacttcaagattattct |
15512466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 15985221 - 15985167
Alignment:
| Q |
401 |
gcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattattct |
455 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
15985221 |
gcttggtgaaacagaaaattcaacatgtccatttactgtacttcaagattattct |
15985167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 453
Target Start/End: Complemental strand, 24275311 - 24275211
Alignment:
| Q |
353 |
attctatattaagccatctatatttggagctgctggtggtggagtaaagcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattat |
452 |
Q |
| |
|
|||||||||| |||| |||| |||||||| || ||||||||| | | ||||| | | || ||||||||| ||||||| |||||||||||||||||||| |
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| T |
24275311 |
attctatattttgccagctatctttggagcagcaggtggtggattgaggcttgctaagactggaaactcaaaatgtccatttactgtacttcaagattat |
24275212 |
T |
|
| Q |
453 |
t |
453 |
Q |
| |
|
| |
|
|
| T |
24275211 |
t |
24275211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 16328206 - 16328152
Alignment:
| Q |
401 |
gcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattattct |
455 |
Q |
| |
|
|||||||| ||||| ||| ||| |||||||| ||||||||||||||||||||||| |
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|
| T |
16328206 |
gcttggtgtaacagaaaattcaacatgtccatttactgtacttcaagattattct |
16328152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 16351625 - 16351571
Alignment:
| Q |
401 |
gcttggtgaaacaggaaactcatcatgtccacttactgtacttcaagattattct |
455 |
Q |
| |
|
|||||||||||| | ||| ||| |||||||| ||||||||||||||||||||||| |
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|
| T |
16351625 |
gcttggtgaaactgaaaattcaacatgtccatttactgtacttcaagattattct |
16351571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 322 - 460
Target Start/End: Complemental strand, 25495319 - 25495178
Alignment:
| Q |
322 |
caaatggaaaccctattttcttttctagtagattctatattaagccatctatatttggagctgctggtggtggagtaaagcttgg---tgaaacaggaaa |
418 |
Q |
| |
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|||||||||||||||||||| | | | |||| |||| | | |||| |||| |||||||| || |||||||||||||||||||| ||| |||| || |
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| T |
25495319 |
caaatggaaaccctattttccctggtgggagatactatctcatgccacctatctttggagcagcaggtggtggagtaaagcttggtcatgatacagaaag |
25495220 |
T |
|
| Q |
419 |
ctcatcatgtccacttactgtacttcaagattattctgaggt |
460 |
Q |
| |
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|||| |||||||| || | ||| ||||||||||||||||||| |
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| T |
25495219 |
ctcaacatgtccagttgcagtatttcaagattattctgaggt |
25495178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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