View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_101 (Length: 222)
Name: NF2176_high_101
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_101 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 18100961 - 18101143
Alignment:
| Q |
21 |
atcggaagatcgactgaattttccggtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgtgagtacgggacaacagc |
120 |
Q |
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| T |
18100961 |
atcggaagatcgactgaattttcccgtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgcgagtacgggacaacagc |
18101060 |
T |
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| Q |
121 |
ggcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaaaagttcgttggagaggtctagtttgcatatttgggat |
203 |
Q |
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| T |
18101061 |
ggcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaagagttcgttggagaggtctagtttgcatatttgggat |
18101143 |
T |
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Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 37858569 - 37858751
Alignment:
| Q |
21 |
atcggaagatcgactgaattttccggtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgtgagtacgggacaacagc |
120 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37858569 |
atcggaagatcgactgaattttcccgtggtggaggagaaatctctaatgctcttcgcgcatgagccgcgaagagccaggccgcgagtacgggacaacagc |
37858668 |
T |
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| Q |
121 |
ggcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaaaagttcgttggagaggtctagtttgcatatttgggat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37858669 |
ggcttcgatcgaggttgtttccacatgcatcgttgacgccgccaaagagttcgttggagaggtctagtttgcatatttgggat |
37858751 |
T |
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