View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_103 (Length: 220)
Name: NF2176_high_103
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_103 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 41710760 - 41710572
Alignment:
| Q |
18 |
attataaaatgatacctaccagagactgcaacaagcaggcagtctacaaccaagaccagtgaccattcaggtctgtttctgataggagaccttttgacct |
117 |
Q |
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| T |
41710760 |
attataaaatgatacctagcagagactgcaacaagcaggcagtctgcaaccaagaccggtgaccattcagatctgtttctgataggagaccttttgacct |
41710661 |
T |
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| Q |
118 |
tttttggaaaaggtctatgttaggaggggtaatgtattatgtagagatagaaatgtaactaacagtgcgattcttgttattttcctttg |
206 |
Q |
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| T |
41710660 |
tttttggaaaaggtctatgttaggaggggtaatgtattatgtagagatagaaatgtaactaacagtgcgattcttgttattttcctttg |
41710572 |
T |
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Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 14109380 - 14109565
Alignment:
| Q |
18 |
attataaaatgatacctaccagagactgcaacaagcaggcagtctacaaccaagaccagtgaccattcaggtctgtttctgataggagaccttttgacct |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||| || |||||||| | ||||||| || |||||||||||||| | |
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| T |
14109380 |
attataaaatgatacctagcagagactgcaacaagcagtgagtcttcaaccaaggccaatggccattcagatatgtttctaattggagaccttttgac-t |
14109478 |
T |
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| Q |
118 |
tttttggaaaaggtctatgttaggaggggtaatgtattatgtagagatagaaatgtaactaacagtgcgattcttgttattttcctttg |
206 |
Q |
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||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
14109479 |
tttgtgcaaaaggtct--gttaggaggggtaatgtattatgtagagatagaaatgtaactaacagttcaattcttgttattttcctttg |
14109565 |
T |
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