View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_15 (Length: 561)
Name: NF2176_high_15
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 32376434 - 32376976
Alignment:
| Q |
1 |
catagaaatttgagggatcatctcaaacaatgtagtgatacatagcaatcaagaagaatcatttccctcttttgctttcagagactatagagattctctt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |
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| T |
32376434 |
catagaaatttaagggatcatctcaaacaatgtagttatacataacaatcaagaagaatcatttccctcttttactttcagagactaaagagcttctctt |
32376533 |
T |
|
| Q |
101 |
tgtattactaatgctattggtggattcattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtcttccgtagccg |
200 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376534 |
tgtactactaatgctattgggggattcattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtcttccgtagccg |
32376633 |
T |
|
| Q |
201 |
aagattgatcgcgggaatcaatttctttcatggataacttatcttccaagagatcataactgttcccagttctagcttcttgagcaagagagcaccaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
32376634 |
aagattgatcgcgggaatcaatttctttcatggataacttatcttccaagatatcataactattcccagtcctggcttcttgagcaagagagcaccaaca |
32376733 |
T |
|
| Q |
301 |
acagcataaccaaagtgtgcaatcagaaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctctttctcatttgaatcctccaaaat |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376734 |
gcagcataaccaaagtgtgcaatcagaaaatgatggttttccaaaacagaattcataggcaggcaaattgaacctctttctcatttgaatcctccaaaat |
32376833 |
T |
|
| Q |
401 |
ccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaatacaaata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376834 |
ccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaatacaaata |
32376933 |
T |
|
| Q |
501 |
tccaaaagggagccatacaaaacagcataaatgtagctatatg |
543 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376934 |
tccaaaagggagccatacaaaacagcataaatgtagctatatg |
32376976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 32364733 - 32365291
Alignment:
| Q |
1 |
catagaaatttgagggatcatctcaaacaatgtagtgatacatagcaatcaagaagaatcatttccctcttttgctttcagagacta---tag-agattc |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| || ||| |
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| T |
32364733 |
catagaaatttgagggatcatctcaaacaatgtagtgatacataacaatcaagaagaatcatttccctcttttgctttcagagaataaggtaggagcttc |
32364832 |
T |
|
| Q |
97 |
tctttgtattactaatgctattggtggattcattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtctt----- |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||| | | |||||| |||||||||||||| |
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| T |
32364833 |
tctttgtattaataatgctattggtggattcatcgtttcatctttacgtcgttcaagagaagaacttgtgtcggatttgcttgatactacgtcttgtcca |
32364932 |
T |
|
| Q |
192 |
-cc------gtagccgaagattgatcgcgggaatcaatttctttcatggataacttatcttccaagagatcataactgttcccagttctagcttcttgag |
284 |
Q |
| |
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|| | | |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||| |
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| T |
32364933 |
gccaaacatgaaaccgaagattgatcgcgagtatcaatttctttcatggataacttatcttccaagatatcataactattcccagtcctggcttcttgag |
32365032 |
T |
|
| Q |
285 |
caagagagcaccaacaacagcataaccaaagtgtgcaatcagaaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctctttctcat |
384 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32365033 |
caagagagcaccaacagcagcataaccaaagtgtgcaatcagaaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctctttctcat |
32365132 |
T |
|
| Q |
385 |
ttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaaca |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32365133 |
ttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgtttgtctaacattgtcatcatcaattctaaca |
32365232 |
T |
|
| Q |
485 |
gaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatg |
543 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32365233 |
gaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatg |
32365291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 277 - 531
Target Start/End: Original strand, 36121643 - 36121897
Alignment:
| Q |
277 |
ttcttgagcaagagagcaccaacaacagcataaccaaagtgtgcaatcagaaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| ||||||| |||| | || || || |||||||| | ||| | ||||||||| ||||| |
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|
| T |
36121643 |
ttcttgagcaagagagcaccaacaacagaatagccaaagtatgcaatccgaaaccgcaggcttgccgaaacagaagtcataagtaggcaaattatacctc |
36121742 |
T |
|
| Q |
377 |
tttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaa |
476 |
Q |
| |
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||||||||||| ||||||||||| |||||||| || | ||| |||||| |||| || ||| | ||||||| ||| |||||| ||||||| |||| |
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| T |
36121743 |
tttctcatttggatcctccaaaaaccaccatagagcataccgaaaaaacatagaacaatcccagcacctactagacattgcctaacagtgtcatcctcaa |
36121842 |
T |
|
| Q |
477 |
ttctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaa |
531 |
Q |
| |
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| |||||| |||||| | || ||||||||||| |||||||| || |||||||| |
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|
| T |
36121843 |
tattaacagcagccaagatgaaaatccaaaagggggccatacagaaaagcataaa |
36121897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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