View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_23 (Length: 490)
Name: NF2176_high_23
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 52882932 - 52882475
Alignment:
| Q |
18 |
acagacaacggaaaaaacattatttacaagaaaattatttatcttatggtcccnnnnnnng--ggtcaaattttatggccccttttgtcatactatagtc |
115 |
Q |
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| T |
52882932 |
acagacaacggaaaaaacattatttacaagaaaattatttatcttatggtcccttttttttttggtcaaattttatggtcccttttgtccaactatagtc |
52882833 |
T |
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| Q |
116 |
tata--ggtttcgtatttttcaaaaaattatcacagtttaatttttaatataatattatatttaattcaccgttttgatttttggctaaaaaaggtgtct |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52882832 |
tatataggtttcgtatttttcaaaaaattatcacagtttaatttttaatataatattatgtttaattcaccgttttgatttttggctaaaaaaggtgtct |
52882733 |
T |
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| Q |
214 |
atgttttcgtgaatgtacttgtttcttcataaaaaaggtgaattaatttgtttaaaagacgtgtaaggtaaaattaattaaatccaaataaagaaagtta |
313 |
Q |
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| T |
52882732 |
atgttttcgtgaatgtacttgtttcttcataaaaaaggtgaattaatttgtttaaaagacgtgtaaggtaaaattaattaaatccaaataaagaaagtta |
52882633 |
T |
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| Q |
314 |
attgaatttggctgtacgtaccttatcattacaggtgagtgacatgggctccccacaaccattggatttggataaactatcctggcagagagggtagtat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52882632 |
attgaatttggctgtacgtaccttatcattacaggtgagtgacatgggctccccacaaccattggatttggataaactatcctggcagagagggtagtat |
52882533 |
T |
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| Q |
414 |
tatgttatgtaaggttgaaatttcatcaaaacatgtgactctgtgatatggtagtagc |
471 |
Q |
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| T |
52882532 |
tatgttatgtaaggttgaaatttcatcaaaacatgtgactctgtgttatggtagtagc |
52882475 |
T |
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