View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_high_25 (Length: 485)

Name: NF2176_high_25
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_high_25
NF2176_high_25
[»] chr5 (14 HSPs)
chr5 (122-462)||(41337077-41337417)
chr5 (183-455)||(31178399-31178671)
chr5 (173-386)||(31188434-31188647)
chr5 (127-455)||(41332155-41332483)
chr5 (174-386)||(31225166-31225378)
chr5 (127-295)||(41316335-41316503)
chr5 (203-389)||(41369731-41369918)
chr5 (127-455)||(41366335-41366660)
chr5 (346-450)||(41286216-41286320)
chr5 (127-235)||(41286404-41286512)
chr5 (127-295)||(41328302-41328470)
chr5 (127-377)||(41324322-41324572)
chr5 (131-295)||(41310595-41310759)
chr5 (244-289)||(41431274-41431319)
[»] chr4 (1 HSPs)
chr4 (127-447)||(17249076-17249396)


Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 122 - 462
Target Start/End: Complemental strand, 41337417 - 41337077
Alignment:
Q  122 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337417 agtaaactaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggt 41337318  T
Q  222 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337317 cttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtctt 41337218  T
Q  322 cactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaac 421  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337217 cactctacttaccttttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaac 41337118  T
Q  422 acttgttggtgtctgttctttttcccaaacgctgaacgtgc 462  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  41337117 aattgttggtgtctgttctttttcccaaacgctgaacgtgc 41337077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 183 - 455
Target Start/End: Original strand, 31178399 - 31178671
Alignment:
Q  183 cattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat 282  Q
    ||||||| ||||||| ||||| |||  |||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| || ||| |||||||||||    
T  31178399 cattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatat 31178498  T
Q  283 cctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattct 382  Q
    | |||||||||||   || ||  | |||| | |||||||||| | ||| |||  |||||| ||||||||||||||||||| |||||||||||||||| ||    
T  31178499 catatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcct 31178598  T
Q  383 cccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctttttcccaaacgctg 455  Q
    ||||  |  | |  |  ||||| ||||| ||||| |||||||||||||||| | ||| |||||||||||||||    
T  31178599 cccatcaaactcgctatttcctttattgctgattggaacacttgttggtgtttattccttttcccaaacgctg 31178671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 386
Target Start/End: Original strand, 31188434 - 31188647
Alignment:
Q  173 tgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgt 272  Q
    ||||||||| ||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||  |||||| |    
T  31188434 tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat 31188533  T
Q  273 cttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaat 372  Q
    ||||||||||| |||||||||||   || |   | |||||| | |||||| | ||||| |||  |||||  ||||||| ||||||||||| |||||||||    
T  31188534 cttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaat 31188633  T
Q  373 acaaaattctccca 386  Q
    ||||||||||||||    
T  31188634 acaaaattctccca 31188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 127 - 455
Target Start/End: Complemental strand, 41332483 - 41332155
Alignment:
Q  127 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 226  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| ||||| |  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41332483 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatcttca 41332384  T
Q  227 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 326  Q
    || ||||||| ||   ||||| || |||| ||||| | |||||||||||||| |||| |||||| |||||  || | | | || | | |||||||| | |    
T  41332383 tcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctctatgaattttttccattttggtcttctccc 41332284  T
Q  327 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttg 426  Q
    |||| |    |||||| ||||||||||||||||||||||| |||||   |||| |||| |||||  ||||| ||| ||| |||| |||| ||||||| |     
T  41332283 tactcatgcattgaagcattttaatagaaggatacaaatctgcaatttcaaatcctcctaatagcaccaatactttctccattgctgatatgaacacatc 41332184  T
Q  427 ttggtgtctgttctttttcccaaacgctg 455  Q
    ||||| ||| ||| |||||||||| ||||    
T  41332183 ttggtttctattccttttcccaaaagctg 41332155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 386
Target Start/End: Complemental strand, 31225378 - 31225166
Alignment:
Q  174 gtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtc 273  Q
    |||||||  ||||||| ||||| | ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| |||||| ||    
T  31225378 gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc 31225279  T
Q  274 ttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaata 373  Q
    |||||||||| |||||||||||   || |   | |||||| |||||||| | ||||| |||  |||||| ||||| ||||||||||||| |||| |||||    
T  31225278 ttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaata 31225179  T
Q  374 caaaattctccca 386  Q
    |||||| ||||||    
T  31225178 caaaatcctccca 31225166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 295
Target Start/End: Complemental strand, 41316503 - 41316335
Alignment:
Q  127 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 226  Q
    ||||||||| |||| |||||||||||| |||||||| || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41316503 actaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41316404  T
Q  227 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 295  Q
    || ||||||  ||   ||||| || || | ||||| | |||||||||||||||| || |||||| ||||    
T  41316403 tcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctct 41316335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 389
Target Start/End: Complemental strand, 41369918 - 41369731
Alignment:
Q  203 agaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctcct-tgt 301  Q
    ||||||||||||||||||||||| |||||| ||  ||  || ||||||||| | |||||||||||||| |||||||||||  |||||  |  | || ||     
T  41369918 agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctga 41369819  T
Q  302 aatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata 389  Q
    | | | || | | |||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  41369818 agtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata 41369731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 455
Target Start/End: Complemental strand, 41366660 - 41366335
Alignment:
Q  127 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 226  Q
    ||||||||| ||||| ||||||||||| || || |||||||| |||||||||||   |||| || |||||| ||||||||||||||| ||||| || |||    
T  41366660 actaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatctactagatcatca 41366564  T
Q  227 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 326  Q
    | ||| || | |||  ||||| |  || | ||||||| |||||| |||||||||||| ||||| ||||||  || | | | |||| | |  || |    |    
T  41366563 ttcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggcc 41366464  T
Q  327 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttg 426  Q
     ||||| | ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||    |||  |||||  |||| |||||| |||||||     
T  41366463 aacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttc 41366364  T
Q  427 ttggtgtctgttctttttcccaaacgctg 455  Q
    ||||||| | |||||||| ||||| ||||    
T  41366363 ttggtgtttattcttttttccaaatgctg 41366335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 41286320 - 41286216
Alignment:
Q  346 tttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctttttc 445  Q
    |||||||||||||||||||||| |||| |||||| ||||||  |||| |||||||||||| |||| | |||||||  ||| ||||||| |||||||||||    
T  41286320 tttaatagaaggatacaaatcaacaatgcaaaatcctcccatcaggctcaatgcttcctccattgctaatttgaatgcttcttggtgtatgttctttttc 41286221  T
Q  446 ccaaa 450  Q
    |||||    
T  41286220 ccaaa 41286216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 41286512 - 41286404
Alignment:
Q  127 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 226  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||| |||| ||||||  || |||| ||||||| ||||||||||||||||| ||| ||||||    
T  41286512 actaacctggatgactgcttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttca 41286413  T
Q  227 tccttgctt 235  Q
    || ||||||    
T  41286412 tctttgctt 41286404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 127 - 295
Target Start/End: Complemental strand, 41328470 - 41328302
Alignment:
Q  127 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 226  Q
    ||||||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| ||||||| ||||||||||||||| ||||| ||||||    
T  41328470 actaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttca 41328371  T
Q  227 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 295  Q
    || ||||||| ||   ||||| |  |||| ||||| | ||||||||||||   |||| |||||||||||    
T  41328370 tcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctct 41328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 377
Target Start/End: Complemental strand, 41324572 - 41324322
Alignment:
Q  127 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 226  Q
    ||||||||| |||| ||| |||||||| ||||| || || || ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| | |||     
T  41324572 actaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattct 41324473  T
Q  227 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 326  Q
    || |||||   ||   ||||| || || | ||||| | ||| ||||||||||||||| |||||||||||   || | | | || | | ||| |||| | |    
T  41324472 tcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagtttttccattttggccttcgccc 41324373  T
Q  327 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaa 377  Q
    |||| ||   |||||| | |||||||||||||||||||||| |||||||||    
T  41324372 tactcacgcattgaagcaatttaatagaaggatacaaatcaacaatacaaa 41324322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 295
Target Start/End: Complemental strand, 41310759 - 41310595
Alignment:
Q  131 acctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatcct 230  Q
    ||||| |||| |||||| ||||| ||||| || || || |||| |||||||  |||||| |||| || ||||||||||||||| ||||| |||||||| |    
T  41310759 acctggatgattgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcat 41310660  T
Q  231 tgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct 295  Q
    ||||   ||   || || || || | ||||| | ||||||||||||||||||| ||| |||||||    
T  41310659 tgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctct 41310595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
Q  244 gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 289  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41431319 gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca 41431274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 127 - 447
Target Start/End: Original strand, 17249076 - 17249396
Alignment:
Q  127 actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttca 226  Q
    ||||||||| |||| |||||||||||| ||||||||||| |  | ||||| || | || |||| ||||||| ||||| |||| |||||||||| ||||||    
T  17249076 actaacctggatgattgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaactagatcttca 17249175  T
Q  227 tccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactc 326  Q
    ||||||| || |||  | ||    ||||| |||||||  ||||| |||||||||||| ||||||| || |  || | | | || | | |||| |||||      
T  17249176 tccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaatttccctatgaagtttttccattttggttttcacct 17249275  T
Q  327 tacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttg 426  Q
     ||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| ||||||| |  | || |  ||||||||||| |||||||||||||||    
T  17249276 gacttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctcccaacaaactcactatttcctctattgctgatttgaacacttg 17249375  T
Q  427 ttggtgtctgttctttttccc 447  Q
    ||||||| ||||| |||||||    
T  17249376 ttggtgtttgttccttttccc 17249396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University