View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_27 (Length: 475)
Name: NF2176_high_27
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 10488344 - 10488034
Alignment:
| Q |
18 |
atttggaacattgattgatgtgttcatacgaaggaaaagagataagtnnnnnnnaatatgttcgactttgttcggttcaaatccgtccaagatgaggagg |
117 |
Q |
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| T |
10488344 |
atttggaacattcattgatgtgttcatacgaaggaaaagagataagtgggggg-aatatgtttgactttgttcggttcaaatccgtccaagatgaggagg |
10488246 |
T |
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| Q |
118 |
acctatatgagaaattagatcaaattcacattggatattgcgagcttaacataaatttaccaagattcaactttgatgaagaataaaatacatcaatcat |
217 |
Q |
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| T |
10488245 |
acctatatgagaaattagatcaaattcacattggatattgcgagcttaacgtaaatttaccaagattcaactttgatgaagaacaaaatacatcaatcat |
10488146 |
T |
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| Q |
218 |
ataggtcaatttggttcatcaatcatctttcataacgtaaatttatcaagattcaagtttgatcaagaacataggagaaaaactccaccaagagcaaaga |
317 |
Q |
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| T |
10488145 |
ataggtcaatttggttcatcaatcatctttcataacgtaaatttaccaagattcaagtttgatcaagaacataggagaaaaactccaccaagagcaaaga |
10488046 |
T |
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| Q |
318 |
tggtgaggccta |
329 |
Q |
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| T |
10488045 |
tggtgaggccta |
10488034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 312 - 475
Target Start/End: Complemental strand, 10488011 - 10487848
Alignment:
| Q |
312 |
caaagatggtgaggcctagatgcaaaggatgcttacatacaagaggttctagtctggagggttttactttttatttcttcaagaggttcgagtcgttact |
411 |
Q |
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| T |
10488011 |
caaagatggtgaggcctagatgcaaagggtgcttacatacaagaggttctagtctgaagggttttactttttatttcttcaagaggttcgagtcgttact |
10487912 |
T |
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| Q |
412 |
taggatttatgttgggattatatttggatcagtttttcgaccatggtagtctcacgcagagttt |
475 |
Q |
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| T |
10487911 |
taggatttatgttgggattatgtttggatcagtttttcgaccatggtagtctcacgcagagttt |
10487848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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