View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_28 (Length: 471)
Name: NF2176_high_28
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 51992758 - 51993217
Alignment:
| Q |
1 |
aaaaacgaaagcatccgtgaatcgggaaatatgaagatcataggtgtacagtgtactaccctgaaaagtaccatgtcagttctaaaataaatctcttctt |
100 |
Q |
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| T |
51992758 |
aaaaacgaaagcatccgtgaatctggaaatatgaagatcataggtgtacagtgtactaccctgaaaagtaccatgtcagttctaaaataaatctcttctt |
51992857 |
T |
|
| Q |
101 |
acaatgtaataaatctaaaattcaacatgaaacatatctacca---atcaacgagggaaactattatgaaaaacaaaacattttacattttagaatccaa |
197 |
Q |
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| T |
51992858 |
acaatgtaataaatctaaaattcaacatgaaacatatctaccagcaatcaacaagggaaactattataaaaaacaaaacattttacattttagaattcaa |
51992957 |
T |
|
| Q |
198 |
acttcagcagagtagaagacatacatg----actcaagaagagttctttctctatgtcaatggaatgatagcaaggtggaacaaatgatggccgtgaaaa |
293 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51992958 |
acttcagcagagtagaagacatacatgcatgactcaagaagagttctttctctatgtcaatggaatgatagcaaggtggaacaaatgatggccgtgaaaa |
51993057 |
T |
|
| Q |
294 |
tatcatcgagccaacaacactaggatgcactttatagcagcccctcaattttagtcttttctcatagtttcatgtgcttcactcccttctatgtgaagac |
393 |
Q |
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| T |
51993058 |
tatcatcgagccaacaacactaggatgcactttatagcagcccctcaattttagtcttttctcatagtttcatgtgcttctctcccttctatgtgaagac |
51993157 |
T |
|
| Q |
394 |
taacctaaatgtagacaaattattgctccaatatatacttacttcaatctccaaaagctctccc |
457 |
Q |
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| T |
51993158 |
taacctaaatgtagacaaattattgctcca----atacttacttcaatctccaaaagctctccc |
51993217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 8187344 - 8187284
Alignment:
| Q |
280 |
gatggccgtgaaaatatcatcgagccaacaacactaggatgcactttatagcagcccctca |
340 |
Q |
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||||||| |||||||||||||||| |||||||| ||||||||| |||||||||| ||||| |
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| T |
8187344 |
gatggccttgaaaatatcatcgagtcaacaacatcaggatgcacattatagcagcgcctca |
8187284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 55505361 - 55505310
Alignment:
| Q |
277 |
aatgatggccgtgaaaatatcatcgagccaacaacactaggatgcactttat |
328 |
Q |
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|||||||||| |||||||| ||| ||| |||||||||||| ||||||||||| |
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| T |
55505361 |
aatgatggccttgaaaataccattgagtcaacaacactagtatgcactttat |
55505310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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