View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_high_33 (Length: 426)
Name: NF2176_high_33
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 6371879 - 6371471
Alignment:
| Q |
1 |
ccctctctcctcttcactcgttcccttcaaaccacaacccaaaccctccaccaagaccaataccaagacccacaatccctcctcaaacaagacccaatcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6371879 |
ccctctctcctcttcactcgttcccttcaaaccacaacccaaaccctccaccaagaccaataccaagacccacaatccctcctcaaacaagacccaatcg |
6371780 |
T |
|
| Q |
101 |
aaatctgcaccaatctttgggtcaaaaccttctcttccccaaaaaccacttcattcccaaatctcactggttatctctccaatttcgatctttgggtctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6371779 |
aaatctgcaccaatctttgggtcaaaaccttctcttccccaaaaaccacttcattcccaaatctcactggttatctctccaatttcgatctttgggtctt |
6371680 |
T |
|
| Q |
201 |
cgcttatcaacgctcatgtgctcatttcaccggaactttccctccccgaaatgctattcacacctccatcctccgtgatcttctctcccttcgtaacgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6371679 |
cgcttatcaacgctcatgtgctcatttcaccggaactttccctccccgaaatgctattcacacctccatcctccgtgatcttctctcccttcgtaacgct |
6371580 |
T |
|
| Q |
301 |
gttcttcgtggtcgtttttgctggaatgacaaaacccatcaattgcttcgttcccccaacgacaaaaagttttcaaaaccgttatcaaaacgaaagcttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6371579 |
gttcttcgtggtcgtttttgctggaatgacaaaacccatcaattgcttcgttccccaaacgacaaaaagttttcaaaaccgttatcaaaacgaaagcttg |
6371480 |
T |
|
| Q |
401 |
aagcttttg |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
6371479 |
aagcttttg |
6371471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University