View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_high_4 (Length: 723)
Name: NF2176_high_4
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_4 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 364 - 723
Target Start/End: Complemental strand, 1486155 - 1485793
Alignment:
| Q |
364 |
tgattgtgtctaattattgatgatttcttctatgtcaaatttcaagagaatgaagacttacatagaagtatgttaacttttgtttgatcgttacctaacg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1486155 |
tgattgtgtctaattattgatgatttcttctatgtcaaatttcaagagaatgaagacttaaatagaagtatgttaacttttgtctgatcgttacctaacg |
1486056 |
T |
|
| Q |
464 |
ataaggaaatgggaaccaaagttcaagcttcatcaagaaactattaccaaagttcaaggtgttaaaatcacgttttaactcgtataatgatttgatctca |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1486055 |
ataaggaaatgggaaccaaagttcaagcttcatcaagaaactattaccaaagttcaaggtgttaaaatcacgttttaactcgtataatgatttgatctca |
1485956 |
T |
|
| Q |
564 |
catttttggatatgaatttcgagttaaatcgcttataaaattgaaac---gtaaaattggacctgaaccaccatggtattataaaactgcatagtctagc |
660 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1485955 |
catttttggatatgaatttcaagttaaatcgcttataaaatcgaaactgagtaaaattggacctgaaccaccatggtattataaagctgcatagtctagc |
1485856 |
T |
|
| Q |
661 |
ttttataaccaccaaaaatacccaacatgatcaactgtcatataaacacttaacatgctaact |
723 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1485855 |
ttttataaccaccaaaaatacccatcatgatcaactgtcatataaacacttaacgtgctaact |
1485793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 164 - 335
Target Start/End: Complemental strand, 1486354 - 1486184
Alignment:
| Q |
164 |
gtcttaaccctcccgttttcatgagaagatggccttaaaaatctggagtttaaacgtaagtaaagtatgactagtaattgcttcagtcaaaattcgaact |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1486354 |
gtcttaaccctcccgttttcatgagaagatggcct-aaaaatctggagtttaaacgtaagtaaagtatgactagtaattgcttcagtcaaaattcaaact |
1486256 |
T |
|
| Q |
264 |
cttattctacctaacttaaagatttgtctttaaataaatttgnnnnnnnataactagcaggtttcttaagac |
335 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1486255 |
cttattctacctaacttaacgatttgtctttaaataaatttgtttttttataactagcaggtttcttaagac |
1486184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 1486506 - 1486416
Alignment:
| Q |
12 |
aaatcaatcatataataagatcttgtaatgcaatatttattatcgatatagtaggaaaaattataatcacaagtgacttctaaaacaatga |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1486506 |
aaatcaatcatataataagatcttgtaatgcaatatttattatcgatatagtaggaaaaattataatcacaagtgacttctaaaacaatga |
1486416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University