View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_high_41 (Length: 391)

Name: NF2176_high_41
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_high_41
NF2176_high_41
[»] chr2 (3 HSPs)
chr2 (146-315)||(22136279-22136449)
chr2 (90-146)||(32073854-32073910)
chr2 (27-60)||(32073822-32073855)
[»] chr4 (7 HSPs)
chr4 (233-344)||(32649169-32649281)
chr4 (186-255)||(32649095-32649164)
chr4 (144-188)||(32225581-32225625)
chr4 (344-376)||(32649321-32649353)
chr4 (146-185)||(23976706-23976745)
chr4 (145-183)||(44376078-44376116)
chr4 (145-186)||(17558824-17558865)
[»] chr5 (7 HSPs)
chr5 (144-200)||(16349713-16349769)
chr5 (146-200)||(4082574-4082628)
chr5 (145-183)||(30096275-30096313)
chr5 (146-204)||(16222687-16222745)
chr5 (146-188)||(40951482-40951524)
chr5 (146-183)||(25099236-25099273)
chr5 (146-183)||(25158326-25158363)
[»] chr8 (5 HSPs)
chr8 (144-198)||(16367864-16367918)
chr8 (146-198)||(42308123-42308175)
chr8 (145-183)||(405353-405391)
chr8 (144-190)||(771642-771688)
chr8 (146-174)||(17695634-17695662)
[»] chr1 (5 HSPs)
chr1 (143-183)||(28947451-28947491)
chr1 (140-198)||(27840301-27840359)
chr1 (146-188)||(51387129-51387171)
chr1 (141-198)||(47250304-47250361)
chr1 (146-190)||(50293655-50293699)
[»] chr7 (1 HSPs)
chr7 (144-183)||(31097904-31097943)
[»] scaffold0896 (1 HSPs)
scaffold0896 (146-183)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (146-183)||(8657064-8657101)
chr6 (146-183)||(33289070-33289107)
[»] chr3 (2 HSPs)
chr3 (146-191)||(53693213-53693258)
chr3 (146-190)||(44708227-44708271)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 22136279 - 22136449
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtc 245  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||| ||||||||   ||||| || |||||||||||||    
T  22136279 actagatcgtccacccgtgttgccgcacgggtcatatatagtttaagacattactcgaaatatattgtagtatga---aacttgtcgcagagaatatgtc 22136375  T
Q  246 tgttgttacagacttatgtgtggtctcgtgatatac----gatgtaacgtagtgtgttttgttgtttcactaaa 315  Q
    |||||||||| |||||||||||||||||||||||||     |||||||||||||||||||| |||| |||||||    
T  22136376 tgttgttacaaacttatgtgtggtctcgtgatatactacaaatgtaacgtagtgtgttttgctgttccactaaa 22136449  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 32073854 - 32073910
Alignment:
Q  90 acttttgataggtatgaaagagtgtcaaactattgtcgctagtctgcaataaataaa 146  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  32073854 acttttgataggtatgaaagagcgacaaactattgtcactagtctgcaataaataaa 32073910  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 32073822 - 32073855
Alignment:
Q  27 cataattaggtagctataagcattctctagttac 60  Q
    |||| |||||||||||||||||||||||||||||    
T  32073822 catacttaggtagctataagcattctctagttac 32073855  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 32649169 - 32649281
Alignment:
Q  233 cagagaatatgtctgttgttacagacttatgtgtggtctcgtgatatacg-atgtaacgtagtgtgttttgttgtttcactaaacttatgtgacagtata 331  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  32649169 cagagaatatgtctgttgttacaaacttatgtgtggtctcgtgatatacgaatgtagcgttgtgtgttttgttgtgtcactaaacttatgtgacagtata 32649268  T
Q  332 tttagtcattaga 344  Q
     ||||||||||||    
T  32649269 cttagtcattaga 32649281  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 32649095 - 32649164
Alignment:
Q  186 gtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtctgttgttaca 255  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  32649095 gtttaagacattacttgaaatatattgtagtatgaatgaacttttcgcagaaaatatgtctgttgttaca 32649164  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 32225581 - 32225625
Alignment:
Q  144 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtt 188  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||    
T  32225581 aaactagatcgtccaccggtgctgccgcacgggtcatatatagtt 32225625  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 32649321 - 32649353
Alignment:
Q  344 aacacattaaatttaaccaccatgaacaacatg 376  Q
    |||||||||||||||||||||||||||||||||    
T  32649321 aacacattaaatttaaccaccatgaacaacatg 32649353  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 23976706 - 23976745
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatata 185  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  23976706 actagatcgtccacccgtgctgccgcacgggtcatatata 23976745  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 44376078 - 44376116
Alignment:
Q  145 aactagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  44376078 aactagatcgtccacccgtgctgccgcacgggtcatata 44376116  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 17558824 - 17558865
Alignment:
Q  145 aactagatcgtccacccgtgctgccgcacgtatcatatatag 186  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatag 17558865  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 16349713 - 16349769
Alignment:
Q  144 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 200  Q
    |||||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  16349713 aaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 16349769  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 4082628 - 4082574
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 200  Q
    |||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 4082574  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 30096275 - 30096313
Alignment:
Q  145 aactagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  30096275 aactagatcgtccacccgtgctgccgcacggatcatata 30096313  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 16222745 - 16222687
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaa 204  Q
    ||||||||||| |||||||||||||||| | |||||||||| | || |||||| |||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaa 16222687  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 40951524 - 40951482
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 188  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 40951482  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 25099236 - 25099273
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25099236 actagatcgtccacccgtgctgccgcacgggtcatata 25099273  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 25158326 - 25158363
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25158326 actagatcgtccacccgtgctgccgcacgggtcatata 25158363  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 16367918 - 16367864
Alignment:
Q  144 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 198  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 42308123 - 42308175
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 198  Q
    ||||||||||||||| |||||||||||||  |||||||||||| || ||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacatta 42308175  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 405353 - 405391
Alignment:
Q  145 aactagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  405353 aactagatcgtccacccgtgctgccgcacgggtcatata 405391  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 771688 - 771642
Alignment:
Q  144 aaactagatcgtccacccgtgctgccgcacgtatcatatatagttta 190  Q
    ||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  771688 aaactaggtcgtctacccgtgctgccgcacgggtcatatatagttta 771642  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 17695662 - 17695634
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacg 174  Q
    |||||||||||||||||||||||||||||    
T  17695662 actagatcgtccacccgtgctgccgcacg 17695634  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 28947451 - 28947491
Alignment:
Q  143 taaactagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  28947451 taaactagatcgtccacccgtgctgccgcacgggtcatata 28947491  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 27840301 - 27840359
Alignment:
Q  140 aaataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 198  Q
    |||| |||||||||||| |||||||||| ||||||  |||| |||||||||| ||||||    
T  27840301 aaatgaactagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacatta 27840359  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 51387129 - 51387171
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 188  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 51387171  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 47250361 - 47250304
Alignment:
Q  141 aataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 198  Q
    |||| ||||||||||||| ||| |||||||||||  |||||||||||| || ||||||    
T  47250361 aatatactagatcgtccatccgagctgccgcacgggtcatatatagttaaaaacatta 47250304  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 50293699 - 50293655
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagttta 190  Q
    ||||||||||| |||| ||||||||||||  ||||||||||||||    
T  50293699 actagatcgtctacccatgctgccgcacgggtcatatatagttta 50293655  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 31097943 - 31097904
Alignment:
Q  144 aaactagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31097943 aaactagatcgtccacccgtgctgccgcacgggtcatata 31097904  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 1146 - 1109
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    |||||||||||||||||||||||||||||  |||||||    
T  1146 actagatcgtccacccgtgctgccgcacgggtcatata 1109  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 8657064 - 8657101
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    |||||||||||||||||||||||||||||  |||||||    
T  8657064 actagatcgtccacccgtgctgccgcacgggtcatata 8657101  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 33289070 - 33289107
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatata 183  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33289070 actagatcgtccacccgtgctgccgcacgggtcatata 33289107  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 53693258 - 53693213
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaa 191  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||    
T  53693258 actagatcgtctacccgtgctgccgcacaggtcatatatagtttaa 53693213  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 44708227 - 44708271
Alignment:
Q  146 actagatcgtccacccgtgctgccgcacgtatcatatatagttta 190  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||    
T  44708227 actagatcgtctacccgtgctgccgcacgggtcatatataattta 44708271  T

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