View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_44 (Length: 382)
Name: NF2176_high_44
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 46147145 - 46146786
Alignment:
| Q |
17 |
aatattagggactatccatgggaaagatacaccttgaaagagttgcttcgtgcaacaaacaactttcatcaagataacaagattggagaaggtggatttg |
116 |
Q |
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| T |
46147145 |
aatattagggactatccatgggaaagatacaccttgaaagagttgcttcgtgcaacaaacaactttcatcaagataacaagattggagaaggtggatttg |
46147046 |
T |
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| Q |
117 |
gaagtgtatattggggtcaaacaagtaaaggcgtcgaggtaatt---------------aaattttgattannnnnnnn-agacaaatattagtaagtta |
200 |
Q |
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| T |
46147045 |
gaagtgtatattggggtcaaacaagtaaaggcgtcgaggtaattaaattttatcccgttaaattttgattttttttttttagacaaatattagtaagtta |
46146946 |
T |
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| Q |
201 |
gtagttgtattagttttctagatcgaattcaaaaccttatgcttaannnnnnnnnnnnnnatgtccctaaactcactaactgagctacctatgtcataca |
300 |
Q |
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| T |
46146945 |
gtagttgtattagttttcgagatcgaattcaaaaccttatgcttaatttttttttttt--atgtccctaaactcactaactgagctacctatgtcataca |
46146848 |
T |
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| Q |
301 |
atttagagtttcttttgttgatgataaactctaaggtatgagagatattttttgtgacacttat |
364 |
Q |
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| T |
46146847 |
atttagagtttcttttgttgatgataaactctaaggtat--gagatattttttgtgacacttat |
46146786 |
T |
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