View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_5 (Length: 716)
Name: NF2176_high_5
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 351 - 701
Target Start/End: Complemental strand, 11399349 - 11399003
Alignment:
| Q |
351 |
tttctctcattcttgtgttgagatagtcacatctgttgttatcattttaaaactataatttcaactttggattgttttgttgnnnnnnnnnnncaaattt |
450 |
Q |
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| T |
11399349 |
tttctctcattctcgtgttgagatagtcacatctaaattttttgagttcaaactataatttcaactttgaattgttttgttgttttttt----caaattt |
11399254 |
T |
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| Q |
451 |
tgttcatagttatactttctcttgttctactatctgagatagtcacatgaatagaataacttcaatttcattataattttacttttttggttgattgttc |
550 |
Q |
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| T |
11399253 |
tgttcatagttatactttctcttgttctagtatctgagatagtcacatgaatagaataacttcaatttcattataatttcacttttttggttgattgttc |
11399154 |
T |
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| Q |
551 |
ttcatgatttcttcatgacttgttcttcatttctttctcagatcgtatgagtccgtgaatgaaggtgaagatctaaatgtggcggatgcagatgtgacaa |
650 |
Q |
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| T |
11399153 |
ttcacgatttcttcatgacatgttctaaatttctttttcagatcggatgagtccgtgaatgaaggtgaagatctaaatgcggcggatgcggatgtgacaa |
11399054 |
T |
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| Q |
651 |
atccattgttgaatataggagatgaatcaattgataaatgtacttatttct |
701 |
Q |
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| T |
11399053 |
atccattgttgaatataggagatgaatcaattgataaatgttcttatttct |
11399003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 11399549 - 11399468
Alignment:
| Q |
122 |
gtaagatgatgtctgagtctgagctagtaacaaatacagaattagcagctgaaaaagagag--agagttagtcacttctcca |
201 |
Q |
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| T |
11399549 |
gtaagatgatgtctgagtctgagctagtaacaaatacataattagcagccgaaaaagagagagagagttagtcacttctcca |
11399468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11399670 - 11399634
Alignment:
| Q |
1 |
aacaccaacaaacagaacacataaacccttatttcat |
37 |
Q |
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| T |
11399670 |
aacaccaacaaacagaacacataaacccttatttcat |
11399634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 11399389 - 11399352
Alignment:
| Q |
280 |
tataatttcaacttcataactatttgaccgattgttat |
317 |
Q |
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| T |
11399389 |
tataatttcaacttcataactatttgactgattgttat |
11399352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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