View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_50 (Length: 357)
Name: NF2176_high_50
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 34257696 - 34257352
Alignment:
| Q |
1 |
tgaaaatggggagtttt-gtttggcaatgcctgaccttagaagttaggtctatctatagaggcctttagaatgacgttaattagtatctgatgcattatg |
99 |
Q |
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| T |
34257696 |
tgaaaatggggagtttttgtttggcaatgcctgaccttagaagttaggtctatctatagaggcctttagaatgacgttaattagtatctaatgcattatg |
34257597 |
T |
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| Q |
100 |
catgtggggttgggcaccattatttctacactcttcttcatggcattcattaggctcttgggtgcaccttgaagccaaagaagttgtgctattttaacac |
199 |
Q |
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| T |
34257596 |
cgtgtggggttgggcaccattatttctacactcttcttcatggcattcattaggctcttgggtgcaccttgaagccaaagaagttgtgctattttaacac |
34257497 |
T |
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| Q |
200 |
agcaattgtcgacatcgtatccaacaacaaagatgagacatggtgtgtgggtcatgcacaaaaaccgaggcttgctcaatatcaacgtgagtattgttga |
299 |
Q |
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| T |
34257496 |
aggaattgtcgacatcgtatccaacaacaaagatgagacatggtgtgtgggtcatgcacaaaaaccgatgcgagctcaatatcaacgtgactattgttga |
34257397 |
T |
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| Q |
300 |
catccatacaaagttgtgat----gtgagtattgatgattgtgtt |
340 |
Q |
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| T |
34257396 |
catccatacaaagctgtggtgtgagtgagtattgatgattgtgtt |
34257352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34248608 - 34248550
Alignment:
| Q |
1 |
tgaaaatggggagtttt-gtttggcaatgcctgaccttagaagttaggtctatctatag |
58 |
Q |
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||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||| |
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| T |
34248608 |
tgaaaatggggagtttttgtttggctatgattgaccttaggagttaggtctatctatag |
34248550 |
T |
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