View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_53 (Length: 340)
Name: NF2176_high_53
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 36239012 - 36239316
Alignment:
| Q |
18 |
ggatcaaggaatttccttgttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggcatttgctg |
117 |
Q |
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| T |
36239012 |
ggatcaaggaatttccttgttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggcatttgctg |
36239111 |
T |
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| Q |
118 |
tattgatatacattggtgatcacataaatccaattaatccttaggtactcagttacgttgcactgctccattcttcaaacaactatttaaactatgatat |
217 |
Q |
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| T |
36239112 |
tattgatatacattggtgatcacataaatccaattaatccttaggtactcagttacgttgcattgctccattcttcaaacaactatttaaactatgatat |
36239211 |
T |
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| Q |
218 |
tacattatatgtggctgagaaaagtgtgcctcacccctttgtagtggccatcatgttcacatacctattcataaagttttttgatatatgtaatttacaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36239212 |
tacattatatgtggctgagaaaagtgtgcctcacccctttgtagtggccatcatgttcacatacctattcataaagtttgttgatatatgtaatttacaa |
36239311 |
T |
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| Q |
318 |
ctata |
322 |
Q |
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||||| |
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| T |
36239312 |
ctata |
36239316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 20969143 - 20969239
Alignment:
| Q |
18 |
ggatcaaggaatttccttgttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggcatttg |
114 |
Q |
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||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
20969143 |
ggatcaaagaacttccttgttgagaataagtttggtcactaaattcttttgataaatcagcattgctaagttctttatgtaatgatgattgcatttg |
20969239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 20969239 - 20969283
Alignment:
| Q |
174 |
gttgcactgctccattcttcaaacaactatttaaactatgatatt |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20969239 |
gttgcactgctccattcttcaaataactatttaaactatgatatt |
20969283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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