View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_54 (Length: 325)
Name: NF2176_high_54
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_54 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 6530843 - 6530743
Alignment:
| Q |
13 |
aatatcacacgaaaatggaaaatggagtatacacacactttggatctacttgagagctatggaagatccaaccaacaagaggagctcaattcatcaccat |
112 |
Q |
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| T |
6530843 |
aatatcacacgaaaatggaaaatggagtatatacacactttggatctacttgagagctatggaagatccaaccaacaagaggagctcaattcatcaccat |
6530744 |
T |
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| Q |
113 |
c |
113 |
Q |
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| T |
6530743 |
c |
6530743 |
T |
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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 6530642 - 6530550
Alignment:
| Q |
208 |
aaagaaaaattgcaactgctgaaggaattatataatctacttatctactaaatgagagtaaaataatagaattaaagggagcgctagaaaccggtaagat |
307 |
Q |
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| T |
6530642 |
aaagaaaaattgcaactgctgaaggaattatataatctact--------aaatgagagtaaaataatagaattaaagggagcgctagaaaccggtaagat |
6530551 |
T |
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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 17998767 - 17998703
Alignment:
| Q |
49 |
actttggatctacttgagagctatggaagatccaaccaacaagaggagctcaattcatcaccatc |
113 |
Q |
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| T |
17998767 |
actttggatctacttgagagctatgaaaaattcaaccaacaagaggagctcaaatcatcaccatc |
17998703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 11098562 - 11098626
Alignment:
| Q |
49 |
actttggatctacttgagagctatggaagatccaaccaacaagaggagctcaattcatcaccatc |
113 |
Q |
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| T |
11098562 |
actttggatctacttgagagctatgaaaaattcaaccaacaagaggagctcaaatcatcaccatc |
11098626 |
T |
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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 36283764 - 36283695
Alignment:
| Q |
45 |
acacactttggatctacttgagagctatggaaga-tccaaccaacaagaggagctcaattcatcaccatc |
113 |
Q |
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| T |
36283764 |
acacactttggatctacttgagagctatgaaaaaattcaaccaacaagaggagctcaaatcatcaccatc |
36283695 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 10755765 - 10755802
Alignment:
| Q |
69 |
ctatggaagatccaaccaacaagaggagctcaattcat |
106 |
Q |
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| T |
10755765 |
ctatggaagatccaaccaacaagaggacctcaattcat |
10755802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 10969534 - 10969571
Alignment:
| Q |
69 |
ctatggaagatccaaccaacaagaggagctcaattcat |
106 |
Q |
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| T |
10969534 |
ctatggaagatccaaccaacaagaggacctcaattcat |
10969571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 806722 - 806801
Alignment:
| Q |
30 |
gaaaatggagtatacacacactttggatctacttgagagctatggaagatccaaccaacaagaggagctcaattcatcaccat |
112 |
Q |
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| T |
806722 |
gaaaatggagggtatacatactttggatctatttaa---ctatggaagatccaaccaacaagaggaccacaattcataaccat |
806801 |
T |
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