View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_56 (Length: 318)
Name: NF2176_high_56
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 2686311 - 2686012
Alignment:
| Q |
1 |
cttcaaaattcaaccaatagtcacctcaaaatcggtgacaatggaaacatagtacttctcaattcatcatcagattcagacaacaacctcatatggtctt |
100 |
Q |
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| T |
2686311 |
cttcaaaattcaaccaatagtcacctcaaaatcggtgacaatggaaacatagtacttctcaattcatcatcagattcagacaacaacctcatatggtctt |
2686212 |
T |
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| Q |
101 |
cgaatcaaacaaaagctaccaacccacttgttcttcagcttttcgataatggaaatttagttctaagagaaacaaacgtgaatgatccgacaaaatatct |
200 |
Q |
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| T |
2686211 |
ccaatcaaacaaaagctaccaacccacttgttcttcagcttttcgataatggaaatttagttctaagagaaacaaacgtgaatgatccgacaaaatatct |
2686112 |
T |
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| Q |
201 |
atggcaaagctttgattatccaacagatactttgttaccatccatgaatatcggttggaacttcgacaaaaacacagaaaaacacttaacatcatggaag |
300 |
Q |
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| T |
2686111 |
atggcaaagctttgattatccaacagatactttgttaccatccatgaatatcggttggaacttcgacaaaaacacagaaaaacacttaacatcatggaag |
2686012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 2669927 - 2669967
Alignment:
| Q |
200 |
tatggcaaagctttgattatccaacagatactttgttacca |
240 |
Q |
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| T |
2669927 |
tatggcagagttttgatcatccaacagatactttgttacca |
2669967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 36360942 - 36361060
Alignment:
| Q |
181 |
aatgatccgacaaaatatctatggcaaagctttgattatccaacagatactttgttaccatccatgaatatcggttggaacttcgacaaaaacacagaaa |
280 |
Q |
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| T |
36360942 |
aatgatccaacaaattttctatggcaaagttttgattaccctacagatactttgttacctggtatgaaacttggttggaacttcgacacgaacacagaaa |
36361041 |
T |
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| Q |
281 |
aacacttaacatcatggaa |
299 |
Q |
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|||| ||| |||||||| |
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| T |
36361042 |
cacacataaattcatggaa |
36361060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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