View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_63 (Length: 310)
Name: NF2176_high_63
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_63 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 20791164 - 20790855
Alignment:
| Q |
1 |
acgacaataacacacctgcaaatagggcatgtcacgtgcgcagaaagccacgtgtcaatacactccgcatgaaacacgtgcttacaatatggaatcatct |
100 |
Q |
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| T |
20791164 |
acgacaataacacacctgcagatagggcatgtcacgtgcgcagaaagccacgtgtcaatacactccgcatgaaacacgtgcttacaatatggaatcatct |
20791065 |
T |
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| Q |
101 |
tcacctcctcgcaaacttcaaactcctccaaacatatcacacagtctggttgcttaacatcttccttatactcacacaccggcagagacttcaccgcggc |
200 |
Q |
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| T |
20791064 |
tcacctcctcgcaaacttcaaactcctccaaacatatcacacagtctggttgcttaacatcttccttatactcacacatcggcagagacttcaccgcggc |
20790965 |
T |
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| Q |
201 |
agaatccaaaccctgccctggtgaatatctacgccggcgtcggaaggaaagttcgcgaaatgataagaggataaaggcaaggaagaaaagggtggagaag |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20790964 |
agaatccaaaccctgccgcagtgaatatctacgccggcgtcggaaggaaagttcgcgaaatgataagaggatgaaggcaaggaagaaaagggtggagaag |
20790865 |
T |
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| Q |
301 |
aggaggagga |
310 |
Q |
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|||||||||| |
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| T |
20790864 |
aggaggagga |
20790855 |
T |
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