View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_78 (Length: 261)
Name: NF2176_high_78
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 2016940 - 2016712
Alignment:
| Q |
17 |
aggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2016940 |
aggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttgcaaattatgcctgtaaggacaacaaaagtac |
2016841 |
T |
|
| Q |
117 |
atgttacaatccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016840 |
atgttacaatccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatatat |
2016741 |
T |
|
| Q |
217 |
ttcttttctcttcttatttggatcatatt |
245 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
2016740 |
ttcttttctcttcttatttggatcatatt |
2016712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 40566734 - 40566938
Alignment:
| Q |
17 |
aggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtac |
116 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||| | |||||||| ||||||| || ||||||||| |
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| T |
40566734 |
aggagtttcctgtgttgttcgactgggcagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtac |
40566833 |
T |
|
| Q |
117 |
atgttacaatccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatatat |
216 |
Q |
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|||||||||| || | |||| |||||| |||||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40566834 |
atgttacaattcagccgagagatctggctacctttgtagatgtgtgcatggatatcggggaaatccttacctcattcatggttgccaaggtactatatat |
40566933 |
T |
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| Q |
217 |
ttctt |
221 |
Q |
| |
|
|||| |
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|
| T |
40566934 |
atctt |
40566938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 40600749 - 40600953
Alignment:
| Q |
17 |
aggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtac |
116 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | | |||||| ||||||| | |||||||||| |
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| T |
40600749 |
aggagtttcctgtgttgttggactgggcagtagggaaccaaacttgtcatcaagctcagaaggatctttccacttatgcgtgtaaggccgacaaaagtac |
40600848 |
T |
|
| Q |
117 |
atgttacaat---ccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcata |
213 |
Q |
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|
||||||| || || |||| | ||||||||||||||| |||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||| ||| |
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| T |
40600849 |
atgttacgatgcaacaactgacagatctggttacctttgtagatgctctcatggatatcggggaaatccttatctcgttcatggttgccaaggtattata |
40600948 |
T |
|
| Q |
214 |
tattt |
218 |
Q |
| |
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||||| |
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|
| T |
40600949 |
tattt |
40600953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 40577853 - 40578067
Alignment:
| Q |
17 |
aggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtac |
116 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| || ||||| |||| ||||||||||||| ||| | | |||||||| ||||||| || |||||||| |
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| T |
40577853 |
aggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtac |
40577952 |
T |
|
| Q |
117 |
atgttacaatccac---ctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcata |
213 |
Q |
| |
|
||||||| | || | | |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||| |
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| T |
40577953 |
atgttacgaaacaggaaccaacaaatctggttacctttgcagatgctctcatggatatcggggaaatccttacctcattaatggttgccaaggtattata |
40578052 |
T |
|
| Q |
214 |
tatttcttttctctt |
228 |
Q |
| |
|
||||| ||||||||| |
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| T |
40578053 |
tattttttttctctt |
40578067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 40571430 - 40571632
Alignment:
| Q |
17 |
aggaatttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtac |
116 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||| |||||||| |||| ||||||||||||| ||||| |||||||| ||||||| | | |||||||| |
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|
| T |
40571430 |
aggagtttcctgtgttgttgaactggacagtaggaaaccaaacatgcctgcaagctcagaagaatcttttcaattatgcatgtaaggccgagaaaagtac |
40571529 |
T |
|
| Q |
117 |
atgttacaatcc---acctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcata |
213 |
Q |
| |
|
||||||| |||| | | | |||||||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||| ||||||| ||| |
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| T |
40571530 |
atgttacgatccaggaaccaacaaatctggttacctttgcagatgctttggtggatatcggggaaatccttacctcattaatggttgcgaaggtattata |
40571629 |
T |
|
| Q |
214 |
tat |
216 |
Q |
| |
|
||| |
|
|
| T |
40571630 |
tat |
40571632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 40589712 - 40589927
Alignment:
| Q |
22 |
tttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaat---tatgcctgtaaggacaacaaaagtacat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||| | ||||| ||||||| ||| ||||| || |
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| T |
40589712 |
tttcctgtgttgttggactgggcagtaggaaaccaaacctgtcagcaagctcagaaggatctttcaagtaagtatgcttgtaaggcagacagaagtatat |
40589811 |
T |
|
| Q |
119 |
gttacaatccac---ctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtatcatata |
215 |
Q |
| |
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||||| || || | ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
40589812 |
gttacgatgcagaaaccatcaaatctggttacctttgcaaatgctttgatggatataggggaaatccttacctcattcatggttgcgaaggtatcatgta |
40589911 |
T |
|
| Q |
216 |
tttcttt-tctcttct |
230 |
Q |
| |
|
||| ||| |||||||| |
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|
| T |
40589912 |
tttttttatctcttct |
40589927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 40596122 - 40596312
Alignment:
| Q |
22 |
tttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttccaaattatgcctgtaaggacaacaaaagtacatgtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | |||||| ||||||| ||||||||| ||||| |
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|
| T |
40596122 |
tttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcggaaggatctttccacttatgcatgtaaggcagacaaaagtaaatgtt |
40596221 |
T |
|
| Q |
122 |
acaat---ccacctgagaaatctggttacctttgcagatgccttcatggatataggggaaatccttacctcattcatggttgccaaggtat |
209 |
Q |
| |
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| || ||| || | |||||||||||||| ||||||||| |||||||| |||| ||||||||||||| ||||| ||||||||||| |
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|
| T |
40596222 |
atgatgcaccaactcacaaatctggttacctctgcagatgcagggatggatattggggtaatccttacctcaaccatggctgccaaggtat |
40596312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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