View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_high_82 (Length: 252)
Name: NF2176_high_82
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_82 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 51992797 - 51992566
Alignment:
| Q |
1 |
tgatcttcatatttccagattcacggatgctttcgtttttgttttactttagatttaatttagagtattcctttgaaactatatttgatgatgatatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51992797 |
tgatcttcatatttccagattcacggatgctttcgtttttgttttattttagatttaatttagagtattcctttgaaactatatttgatgatgatatcgt |
51992698 |
T |
|
| Q |
101 |
tatgttacacatggaatttattttttgcttggaattaaatccaagcctgctaatacagacaagaggttcctatacatacatgttttcttttcatcatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51992697 |
tatgttacacatggaatttattttttgcttggaattaaatccaagc---ctaatacagacaagaggttcctatacatacatgttttcttttcatcatagt |
51992601 |
T |
|
| Q |
201 |
tctcaatttg-aaataaataatagcttatgagaac |
234 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
51992600 |
tctcaatttgaaaataaataatagcttatgagaac |
51992566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University