View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_88 (Length: 240)
Name: NF2176_high_88
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_88 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 24383848 - 24383685
Alignment:
| Q |
46 |
ggaaaacttggaacacttctccatatattatcacccaaactaaaaatccttgcatctctgctcatttcacagaagttcactaccttataggtgtctgtta |
145 |
Q |
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| T |
24383848 |
ggaaaacttggaatacttttccaaatattatcacccaaactaaaaatccttgcatctctgctcgttgcacagaagttcacgaccttataggtgtcagtta |
24383749 |
T |
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| Q |
146 |
aagtatcgtaaccaaatccaaacatagatccttatttatcagtaaaagtccctaattttttaga |
209 |
Q |
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| T |
24383748 |
aagtatcataaccaaatccaaacatatttctatatttatcagtaaaagtccctaattttttaga |
24383685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 24391126 - 24391011
Alignment:
| Q |
46 |
ggaaaacttggaacacttctccatatattatcacccaaactaaaaatccttgcatctctgctcatttcacagaagttcactaccttataggtgtctgtta |
145 |
Q |
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| T |
24391126 |
ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatctctactcatttgacaaaactccactaccttatatgtgtccgttg |
24391027 |
T |
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| Q |
146 |
aagtatcgtaaccaaa |
161 |
Q |
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| T |
24391026 |
aattatcaaaaccaaa |
24391011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 24384910 - 24384841
Alignment:
| Q |
43 |
tcaggaaaacttggaacacttctccatatattatcacccaaactaaaaatccttgcatctctgctcattt |
112 |
Q |
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| T |
24384910 |
tcaggaaaactttgaatacttctccaaatatcatctcccaaactaaaaaccttcacatctctactcattt |
24384841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 24955958 - 24956024
Alignment:
| Q |
110 |
tttcacagaagttcactaccttataggtgtctgttaaagtatcgtaaccaaatccaaacatagatcc |
176 |
Q |
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| T |
24955958 |
tttcacaaacgttcactaccttataggtgtcagttaaagtatcataaccaaacccaaacatatatcc |
24956024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 24950449 - 24950531
Alignment:
| Q |
70 |
atattatcacccaaactaaaaatccttgcatctctgctcatttcacagaagttcactaccttataggtgtctgttaaagtatc |
152 |
Q |
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| T |
24950449 |
atattatcacccaaactaaaaactctcacctctctattcgtttcacaaacgttcactaccttataggtgtcagttaaagtatc |
24950531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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