View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_high_89 (Length: 240)
Name: NF2176_high_89
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_89 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 48817354 - 48817558
Alignment:
| Q |
17 |
aaaaaggaaagtaaaggatcaagaacattattacctaacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48817354 |
aaaaaggaaagtaaaggatcaagaacattattacctaacactgtgaccattgatctgaaagccaggaccttgaggttgataactagcaagactatgctgt |
48817453 |
T |
|
| Q |
117 |
tttggtccaaatggtggactttgttttgaaaccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48817454 |
tttggtccaaatggtggactttgttttgaaaccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttca |
48817553 |
T |
|
| Q |
217 |
ttaga |
221 |
Q |
| |
|
||||| |
|
|
| T |
48817554 |
ttaga |
48817558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 48833558 - 48833387
Alignment:
| Q |
46 |
attacctaacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgttttggtccaaatggtggactttgttttga |
145 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48833558 |
attacctaacactgtggccattgatctggaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggtgggttttgttttga |
48833459 |
T |
|
| Q |
146 |
aaccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcat |
217 |
Q |
| |
|
|||| || ||| | |||||||| |||||||| | ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
48833458 |
aacctgatattcattgttctcagctgtaggcacagtttcaatttccctgtcatgatactcaacaattttcat |
48833387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 15827308 - 15827478
Alignment:
| Q |
47 |
ttacctaacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgttttggtccaaatggtggactttgttttgaa |
146 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
15827308 |
ttacctaacactatggccattgatcaagaagccaggaccttgaggttgatgacttgcaagactatgctgttttggtccaaatggaggtctttgttttgaa |
15827407 |
T |
|
| Q |
147 |
accctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttcat |
217 |
Q |
| |
|
|| | || ||||| |||||||| |||||||| ||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
15827408 |
gccttatattcagtgttctcagccgtaggcacaacttcaacttctctatcatgatattcaacaattttcat |
15827478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 215
Target Start/End: Original strand, 48791837 - 48792004
Alignment:
| Q |
48 |
tacctaacactgtgaccattgatctgaaagccaggaccttgaggttgatgactagcaagactatgctgttttggtccaaatggtggactttgttttgaaa |
147 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
48791837 |
tacctaacactatggcccttgatctggaagccaggaccttgaggttgatgactggtaagactatgctggtttggtccaaatggtgggctttgttttgaaa |
48791936 |
T |
|
| Q |
148 |
ccctgtaatcagtattctcagcagtaggcactgcttcaacatctctatcatggtactcaacaattttc |
215 |
Q |
| |
|
|| || ||||| || ||||| |||||||| | ||||| ||||| ||||| || |||||||||||| |
|
|
| T |
48791937 |
cctgatattcagtgttttcagctgtaggcacagtttcaatttctctgtcatgatattcaacaattttc |
48792004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University