View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_9 (Length: 657)
Name: NF2176_high_9
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 97 - 598
Target Start/End: Complemental strand, 43841593 - 43841086
Alignment:
| Q |
97 |
taataaaactaagttatgcttacgttgatgcgttaattcatattttatcaacataaatagattaagtttaggaattaccatgctatagtactccaatgct |
196 |
Q |
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| T |
43841593 |
taataaaactaagttatgcttacgttgatgcgttaattcatattttatcaacataaatagattaagtttaggaattaccatgctatagtactccaatact |
43841494 |
T |
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| Q |
197 |
gtgttggttttgtcacattatattttgaattataaagagtagcaggttacgatattggaccgctagaatctataatatatttgaaagatttaaatttaaa |
296 |
Q |
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| T |
43841493 |
gtgttggttttgtcacattatattttgaattataaagagtagcaggttacgatattggaccgctagaatctatgatatatttgaaagatttaaatttaaa |
43841394 |
T |
|
| Q |
297 |
atgagtgtagtgcagtgtgagagggtgactgacttcccagttctctacatgtattttgcaggtagcacttaatgctgccaaacacaaagaattgaagtta |
396 |
Q |
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| T |
43841393 |
atgagtgtagtgcagtgtgagagggtgactgacttcccagttctctacatgtattttgcaggtagcacttaatgctgccaaacacaaagaattgaagtta |
43841294 |
T |
|
| Q |
397 |
ttaaaacgataccacctactactccaaaccaagatgtcagatggtaactacccttccaatctctaaataaagtaatggatttatttaccaacgaagtttg |
496 |
Q |
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| T |
43841293 |
ttaaaacgataccacctactactccaaaccaagatgtcagatggtaactacccttccaatctctaaataaattaatggatttatttaccaacgaagtttg |
43841194 |
T |
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| Q |
497 |
tctaatgaaccc------aaatctgtgatagtgtgacgaatcaatgtttaagttttaaaccgtttaataatatcttgaataaggttatccattttaaaag |
590 |
Q |
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| T |
43841193 |
tctaatgaacccagtgttatatttgttatagtgtgacgaatcaatgtttaaattttaaaccgtttaataatatcttgaataaggttatccactttaaaag |
43841094 |
T |
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| Q |
591 |
gtctatga |
598 |
Q |
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| T |
43841093 |
gtctatga |
43841086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 43841643 - 43841581
Alignment:
| Q |
19 |
tctatattgcaattccttattaactaagttatgcttacgtatttt--ttttaataaaactaag |
79 |
Q |
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| T |
43841643 |
tctatattgcaagtccttattaactaaattatgcttacgtattttttttttaataaaactaag |
43841581 |
T |
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