View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_high_90 (Length: 239)
Name: NF2176_high_90
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_high_90 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 24179390 - 24179170
Alignment:
| Q |
19 |
acgttctcgtcaaggaatctcagtactgcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacag |
118 |
Q |
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| T |
24179390 |
acgttctcgtcaaggaatctcagtactgcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacag |
24179291 |
T |
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| Q |
119 |
cggagatttcccggcagagtctacggcaaacagcgtcgtagaggttcgaggaaggagaaagaaaagtgtagccaccgccgtggaagaaaatgactacagg |
218 |
Q |
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| T |
24179290 |
cggagatttcccggcagagtctacggcaaacagcgtcgtagaggttcgaggaaggagaaagaaaagtgtagccaccgccgtggaagaaaatgacgacagg |
24179191 |
T |
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| Q |
219 |
aagggaggttgttttggtggc |
239 |
Q |
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| T |
24179190 |
aagggaggttgctttggtggc |
24179170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 24189196 - 24188977
Alignment:
| Q |
19 |
acgttctcgtcaaggaatctcagtactgcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24189196 |
acgttctcgtcaaggaatctcagtactgcttctccgtcttcatattgcgacggatagcgatgctctggtgcaagtcggtagttgacggagacaatgacag |
24189097 |
T |
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| Q |
119 |
cggagatttcccggcagagtctacggcaaacagcgtcgtagaggttcgaggaaggagaaagaaaagtgtagccaccgccgtggaagaaaatgactacagg |
218 |
Q |
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| T |
24189096 |
cggagatttcccggcagagtctacgacaaaccgcatcgtagaggtttgaggaagaagaaagaaaagtgaagccaccaccgtggaagaaaatgacgacggg |
24188997 |
T |
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| Q |
219 |
aagggaggttgttttggtgg |
238 |
Q |
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| T |
24188996 |
aagggaggtagttttggtgg |
24188977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 236
Target Start/End: Complemental strand, 24168927 - 24168737
Alignment:
| Q |
46 |
gcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagagtctacggc |
145 |
Q |
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| T |
24168927 |
gcttctccgtcttcgtattgcgacggatagcaatgctccggtgtgaggcggtagttgacagagacaacaacaacggatatttcccggcagagtctacggc |
24168828 |
T |
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| Q |
146 |
aaacagcgtcgtagaggttcgaggaaggagaaagaaaagtgtagccaccgccgtggaagaaaatgactacaggaagggaggttgttttggt |
236 |
Q |
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| T |
24168827 |
aaaaagcatcatagtagatagaggaggggcaaagataggtgaagccaccaccgtggaagaaaatgacaacgggaagggaggttgttttggt |
24168737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 24152097 - 24151907
Alignment:
| Q |
49 |
tctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagagtctacggcaaa |
148 |
Q |
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||||| || |||||||| |||||||| | |||||| |||||||| ||||||||||| ||||| | |||||| | | ||||| ||||||||||||||| | |
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| T |
24152097 |
tctccatcatcatattgcgacggatatctatgctccggtgtaaggcggtagttgacagagacgacaacagcgaaaacttccctgcagagtctacggcata |
24151998 |
T |
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| Q |
149 |
cagcgtcgt-agaggttcgaggaaggagaaagaaaagtgtagccaccgccgtggaagaaaatgactacaggaagggaggttgttttggtggc |
239 |
Q |
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| T |
24151997 |
aagcatcgtgatagatt-gaggagggggaaagaaaactgaagccaccaccgtggaagtaaatgatgacaggaagggaggttgttttagtggc |
24151907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 24112812 - 24112700
Alignment:
| Q |
46 |
gcttctccgtcttcatattgtgacggataccgatgctctggtgtaagtcggtagttgacggagacaatgacagcggagatttcccggcagagtctacggc |
145 |
Q |
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|||||||||||||| ||||| || |||||||||||||| ||||| | ||||||||||||||||| | ||||| ||||| |||||||| ||| |||| |
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| T |
24112812 |
gcttctccgtcttcgtattgcgatggataccgatgctccggtgtgtgacggtagttgacggagacgacaacagcattgattttccggcagaatctccggc |
24112713 |
T |
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| Q |
146 |
aaacagcgtcgta |
158 |
Q |
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| T |
24112712 |
aaacagcatcgta |
24112700 |
T |
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