View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_109 (Length: 225)
Name: NF2176_low_109
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_109 |
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| [»] scaffold0549 (1 HSPs) |
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Alignment Details
Target: scaffold0549 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0549
Description:
Target: scaffold0549; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6710 - 6920
Alignment:
| Q |
1 |
aactttgtttagttttgtttcatgtgtgataccaggccaaaacaagtattcttcggtaagagaaaggacaaaactaaacgagaccttcgtaacttagtac |
100 |
Q |
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| T |
6710 |
aactttgtttagttttgtttcatgtgtgataccaggccaaaacaagtattcttcggtaagggaaaggacaaaactaaacgagaccttcgaaacttagtac |
6809 |
T |
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| Q |
101 |
atacaacttgcaagagaaaggacgaatcaatcggagatcatctcattttaggattattcatcactggtgacaggaaagactatttataatggtccagtaa |
200 |
Q |
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| T |
6810 |
atacaacttgcaagagaaaggacgaatcaatcggagatcatctcattttaggactattcatcactggtgacaggaaagactatttataatggtccagtaa |
6909 |
T |
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| Q |
201 |
tggaagaaaat |
211 |
Q |
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| T |
6910 |
tggaagaaaat |
6920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 34478317 - 34478107
Alignment:
| Q |
1 |
aactttgtttagttttgtttcatgtgtgataccaggccaaaacaagtattcttcggtaagagaaaggacaaaactaaacgagaccttcgtaacttagtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
34478317 |
aactttgtttagttttgtttcatgtgtgataccaggccaaaacaagtattcttcggtaagggaaaggacaaaactaaacgagaccttcgaaacttagtac |
34478218 |
T |
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| Q |
101 |
atacaacttgcaagagaaaggacgaatcaatcggagatcatctcattttaggattattcatcactggtgacaggaaagactatttataatggtccagtaa |
200 |
Q |
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| T |
34478217 |
atacaacttgcaagagaaaggacgaatcaatcggagatcatctcattttaggactattcatcactggtgacaggaaagactatttataatggtccagtaa |
34478118 |
T |
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| Q |
201 |
tggaagaaaat |
211 |
Q |
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| T |
34478117 |
tggaagaaaat |
34478107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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