View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_110 (Length: 222)

Name: NF2176_low_110
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_110
NF2176_low_110
[»] chr4 (8 HSPs)
chr4 (10-222)||(22496801-22497014)
chr4 (180-222)||(33047439-33047481)
chr4 (180-222)||(49812170-49812212)
chr4 (187-222)||(28974255-28974290)
chr4 (187-222)||(54729607-54729642)
chr4 (180-222)||(8294972-8295014)
chr4 (180-222)||(18849883-18849925)
chr4 (180-222)||(29644296-29644338)
[»] chr1 (10 HSPs)
chr1 (179-222)||(7785398-7785441)
chr1 (187-222)||(6784951-6784986)
chr1 (187-222)||(34877214-34877249)
chr1 (187-222)||(36784262-36784297)
chr1 (187-222)||(46536288-46536323)
chr1 (187-222)||(52830538-52830573)
chr1 (180-222)||(2219572-2219614)
chr1 (187-216)||(11324196-11324225)
chr1 (187-216)||(11482217-11482246)
chr1 (181-222)||(19533044-19533085)
[»] chr5 (8 HSPs)
chr5 (187-222)||(25814312-25814347)
chr5 (180-222)||(4044601-4044643)
chr5 (187-222)||(3725135-3725170)
chr5 (187-222)||(13422476-13422511)
chr5 (187-222)||(15814611-15814646)
chr5 (180-222)||(6610776-6610818)
chr5 (180-222)||(11099602-11099644)
chr5 (180-218)||(41686620-41686658)
[»] chr2 (13 HSPs)
chr2 (187-222)||(42881401-42881436)
chr2 (187-222)||(44194600-44194635)
chr2 (180-222)||(28572152-28572194)
chr2 (187-222)||(3100348-3100383)
chr2 (187-222)||(7650099-7650134)
chr2 (187-222)||(13375598-13375633)
chr2 (187-222)||(28526912-28526947)
chr2 (187-222)||(41436027-41436062)
chr2 (187-222)||(44534611-44534646)
chr2 (180-222)||(565038-565080)
chr2 (180-222)||(7213416-7213458)
chr2 (180-222)||(43077849-43077891)
chr2 (177-218)||(2870589-2870630)
[»] chr8 (6 HSPs)
chr8 (180-222)||(33191033-33191075)
chr8 (187-222)||(5391996-5392031)
chr8 (187-222)||(26570283-26570318)
chr8 (187-222)||(29615746-29615781)
chr8 (187-222)||(29730992-29731027)
chr8 (180-222)||(138974-139016)
[»] chr7 (7 HSPs)
chr7 (180-222)||(48981320-48981362)
chr7 (187-222)||(31581567-31581602)
chr7 (187-222)||(33774165-33774200)
chr7 (180-222)||(7426003-7426045)
chr7 (180-222)||(11616502-11616544)
chr7 (180-222)||(34963935-34963977)
chr7 (180-222)||(40590949-40590991)
[»] chr6 (3 HSPs)
chr6 (180-222)||(7359184-7359226)
chr6 (187-222)||(3604724-3604759)
chr6 (180-222)||(15081364-15081406)
[»] chr3 (4 HSPs)
chr3 (180-222)||(43640689-43640731)
chr3 (187-222)||(21296627-21296662)
chr3 (187-222)||(33994605-33994640)
chr3 (180-222)||(21585534-21585576)
[»] scaffold0007 (1 HSPs)
scaffold0007 (187-222)||(230205-230240)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 22497014 - 22496801
Alignment:
Q  10 aagaatatggcttgtttg-gcccaagtttttgagagtggtatgcaagtgcctatttaaactgatctaaaaatctcaaatggctgccaattagcaattaat 108  Q
    ||||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22497014 aagaaaatggcttgtttttgcccaagtttttgagagtgatatgcaagtgcctatttaaactgatctaaaaatctcaaatggctgccaattagcaattaat 22496915  T
Q  109 catcaacataaactaaacaaataagcagttttagaacttgagttgtagatgaataaaaacgtacccattccgtcccataataactgaatcatttcacttt 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||||| |||||    
T  22496914 catcaacataaactaaacaaacaagcagttttagaacttgagttgtagatgaataaaaacgtactcatttcgtctcatagtaactgaatcattttacttt 22496815  T
Q  209 tcaatacaatatta 222  Q
    | |||| |||||||    
T  22496814 ttaatataatatta 22496801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 33047439 - 33047481
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  33047439 gtcccaaaataactgagtcatttcacttttcaatacaatatta 33047481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 49812170 - 49812212
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  49812170 gtcccaaaataactgagtcatttcacttttcaatacaatatta 49812212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 28974255 - 28974290
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  28974255 aataactgagtcatttcacttttcaatacaatatta 28974290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 54729642 - 54729607
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||||||||||||||||||| |||||||||||||    
T  54729642 aataactgaatcatttcactttccaatacaatatta 54729607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 8294972 - 8295014
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| |||||| || ||||||||||||||||||||||||||    
T  8294972 gtcccaaaataaccgagtcatttcacttttcaatacaatatta 8295014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 18849925 - 18849883
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| |||||||||||||||||| |||||||    
T  18849925 gtcccaaaataactgagtcatttcacttttcaataaaatatta 18849883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 29644296 - 29644338
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| |||||||||  |||||||||||||||||||||||||    
T  29644296 gtcccaaaataactgagacatttcacttttcaatacaatatta 29644338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 7785441 - 7785398
Alignment:
Q  179 cgtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  7785441 cgtcccataataactgagtcatttcacttttcaatacaatatta 7785398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 6784951 - 6784986
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||| ||||||||||||||||||||||||||||||    
T  6784951 aataattgaatcatttcacttttcaatacaatatta 6784986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 34877249 - 34877214
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  34877249 aataactgaatcattttacttttcaatacaatatta 34877214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 36784262 - 36784297
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  36784262 aataactgagtcatttcacttttcaatacaatatta 36784297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 46536288 - 46536323
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  46536288 aataactgagtcatttcacttttcaatacaatatta 46536323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 52830573 - 52830538
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  52830573 aataactgagtcatttcacttttcaatacaatatta 52830538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 2219614 - 2219572
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||| |||| |||||||||||||||||||||||||    
T  2219614 gtcccaaaataattgaaccatttcacttttcaatacaatatta 2219572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 11324196 - 11324225
Alignment:
Q  187 aataactgaatcatttcacttttcaataca 216  Q
    ||||||||||||||||||||||||||||||    
T  11324196 aataactgaatcatttcacttttcaataca 11324225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 11482217 - 11482246
Alignment:
Q  187 aataactgaatcatttcacttttcaataca 216  Q
    ||||||||||||||||||||||||||||||    
T  11482217 aataactgaatcatttcacttttcaataca 11482246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 19533085 - 19533044
Alignment:
Q  181 tcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||| ||||||||| |||||| |||||||||||||||||||    
T  19533085 tcccaaaataactgagtcattttacttttcaatacaatatta 19533044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 25814312 - 25814347
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  25814312 aataactgaatcatttcacttttcaatacaatatta 25814347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 4044643 - 4044601
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  4044643 gtcccaaaataattgaatcatttcacttttcaatacaatatta 4044601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 3725135 - 3725170
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3725135 aataactgagtcatttcacttttcaatacaatatta 3725170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 13422511 - 13422476
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13422511 aataactgattcatttcacttttcaatacaatatta 13422476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 15814611 - 15814646
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  15814611 aataactgagtcatttcacttttcaatacaatatta 15814646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 6610776 - 6610818
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||    
T  6610776 gtcccaaaataactgagtcatttcacttttaaatacaatatta 6610818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 11099644 - 11099602
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| |||||||||||| |||||||||||||    
T  11099644 gtcccaaaataactgagtcatttcactttccaatacaatatta 11099602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 41686658 - 41686620
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaat 218  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  41686658 gtcccaaaataactgagtcatttcacttttcaatacaat 41686620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 42881436 - 42881401
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  42881436 aataactgaatcatttcacttttcaatacaatatta 42881401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 44194600 - 44194635
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  44194600 aataactgaatcatttcacttttcaatacaatatta 44194635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 28572152 - 28572194
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  28572152 gtcccaaaataactgagtcatttcacttttcaatacaatatta 28572194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 3100348 - 3100383
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3100348 aataactgagtcatttcacttttcaatacaatatta 3100383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 7650134 - 7650099
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7650134 aataactgaatcatttcacttttaaatacaatatta 7650099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 13375633 - 13375598
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13375633 aataactgagtcatttcacttttcaatacaatatta 13375598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 28526912 - 28526947
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||||||||||||||||||||||||| |||||||    
T  28526912 aataactgaatcatttcacttttcaatataatatta 28526947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 41436027 - 41436062
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41436027 aataactgagtcatttcacttttcaatacaatatta 41436062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 44534646 - 44534611
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  44534646 aataactgagtcatttcacttttcaatacaatatta 44534611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 565038 - 565080
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||| |||||||| |||||||||||||||||||    
T  565038 gtcccaaaataactaaatcattttacttttcaatacaatatta 565080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 7213416 - 7213458
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||| | ||||||||||||||||||||||||||||    
T  7213416 gtcccaaaataattaaatcatttcacttttcaatacaatatta 7213458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 43077891 - 43077849
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| |||||| || ||||||||||||||||||||||||||    
T  43077891 gtcccaaaataacggagtcatttcacttttcaatacaatatta 43077849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 2870589 - 2870630
Alignment:
Q  177 tccgtcccataataactgaatcatttcacttttcaatacaat 218  Q
    ||||||||||||| ||| || |||||||||||||||||||||    
T  2870589 tccgtcccataatgactcaaccatttcacttttcaatacaat 2870630  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 33191075 - 33191033
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  33191075 gtcccaaaataactgagtcatttcacttttcaatacaatatta 33191033  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 5391996 - 5392031
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5391996 aataactgagtcatttcacttttcaatacaatatta 5392031  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 26570318 - 26570283
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26570318 aataactgattcatttcacttttcaatacaatatta 26570283  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 29615746 - 29615781
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||||||||||||| |||||||||||||||||||    
T  29615746 aataactgaatcattttacttttcaatacaatatta 29615781  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 29731027 - 29730992
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29731027 aataactgagtcatttcacttttcaatacaatatta 29730992  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 138974 - 139016
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| |||||| || ||||||||||||||||||||||||||    
T  138974 gtcccaaaataaccgagtcatttcacttttcaatacaatatta 139016  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 48981320 - 48981362
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  48981320 gtcccaaaataactgagtcatttcacttttcaatacaatatta 48981362  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 31581602 - 31581567
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31581602 aataactgagtcatttcacttttcaatacaatatta 31581567  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 33774200 - 33774165
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  33774200 aataactgagtcatttcacttttcaatacaatatta 33774165  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 7426045 - 7426003
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| |||||||||  |||||||||||||||||||||||||    
T  7426045 gtcccaaaataactgagccatttcacttttcaatacaatatta 7426003  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 11616502 - 11616544
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| |||||||||  |||||||||||||||||||||||||    
T  11616502 gtcccaaaataactgagccatttcacttttcaatacaatatta 11616544  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 34963977 - 34963935
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| |||||||||||||||||||| |||||    
T  34963977 gtcccaaaataactgagtcatttcacttttcaatacagtatta 34963935  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 40590991 - 40590949
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||    
T  40590991 gtcccaaaataactgagtcatttcacttttaaatacaatatta 40590949  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 7359184 - 7359226
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| |||||||||| |||||||||||||||||||||||||    
T  7359184 gtcccaaaataactgaaccatttcacttttcaatacaatatta 7359226  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 3604759 - 3604724
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3604759 aataactgagtcatttcacttttcaatacaatatta 3604724  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 15081364 - 15081406
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  15081364 gtcccaaaataactgaacaatttcacttttcaatacaatatta 15081406  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 43640731 - 43640689
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  43640731 gtcccaaaataactgagtcatttcacttttcaatacaatatta 43640689  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 21296662 - 21296627
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21296662 aataactgagtcatttcacttttcaatacaatatta 21296627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 33994605 - 33994640
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  33994605 aataactgagtcatttcacttttcaatacaatatta 33994640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 21585576 - 21585534
Alignment:
Q  180 gtcccataataactgaatcatttcacttttcaatacaatatta 222  Q
    |||||| ||||||||| |||||||||||| |||||||||||||    
T  21585576 gtcccaaaataactgagtcatttcactttccaatacaatatta 21585534  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 230205 - 230240
Alignment:
Q  187 aataactgaatcatttcacttttcaatacaatatta 222  Q
    ||||||||| ||||||||||||||||||||||||||    
T  230205 aataactgagtcatttcacttttcaatacaatatta 230240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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