View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_115 (Length: 217)
Name: NF2176_low_115
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_115 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32360530 - 32360740
Alignment:
| Q |
1 |
attgtcctatgagagatttccacttgaagggacccatccccgtaaataatggtaacatgagttctttatttgttgaggagaaaagttaattgagattttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
32360530 |
attgtcctatgagagatttccacttgaagggacccatccccgtaaataatggtaacataac------atgagttgaggagaaaagttaattgagattttg |
32360623 |
T |
|
| Q |
101 |
atcaatattaattaataaaacgcattgaatgtctgtgattttgtttttgatctaccttatcacgctaacatgtttagctcaacttactttggtaggtgga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32360624 |
atcaatattaattaataaaacgcattgaatgtgtgtgattttgtttttgatctaccttatcacgctaacatgtttagctcaacttactttggtaggtgga |
32360723 |
T |
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| Q |
201 |
agaaactccccttagaa |
217 |
Q |
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||||||||||||||||| |
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| T |
32360724 |
agaaactccccttagaa |
32360740 |
T |
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