View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_117 (Length: 214)
Name: NF2176_low_117
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_117 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 11643455 - 11643289
Alignment:
| Q |
32 |
ataaaacaaaaccagtaccaccagccaaacaattgtgaagtaatagccatggaaattgacnnnnnnn-----ccataaattgaacacacatttttattct |
126 |
Q |
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| T |
11643455 |
ataaaacaaaaccagtacca---gccaaacaattgtgaagtaatagccatggaaattgacaactacaaaaaaccataaattgaacacacatttttattct |
11643359 |
T |
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| Q |
127 |
gaaatctcaaaagagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
197 |
Q |
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| T |
11643358 |
gaaatctcaaa-gagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
11643289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 11624897 - 11624800
Alignment:
| Q |
99 |
ccataaattgaacacacatttttattctgaaatctcaaaagagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
197 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11624897 |
ccataaattgaacatacatttttattctgaaatctcaaa-gagttcacaaaaacagattatgctccatgatttatttggttgaaacttaacataaattt |
11624800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 11602589 - 11602685
Alignment:
| Q |
99 |
ccataaattgaacac-acatttttattctgaaatctcaaaagagttcacaaaaacagattatgctccctgatttatttggttgaaacttaacataaattt |
197 |
Q |
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|||||||||||||| |||||||||||||| | ||||||| ||||||| |||| || ||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
11602589 |
ccataaattgaacaatacatttttattctgca-tctcaaa-gagttcataaaa-catattatactcccttatttatttggttgaaacttaacataaattt |
11602685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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