View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_14 (Length: 599)
Name: NF2176_low_14
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Original strand, 43251882 - 43252452
Alignment:
| Q |
11 |
cataggacttgtataaattgggagctagaaaaattggagtgacttcactaccaccattagggtgtctacctgctacaaggactttatttggattccatga |
110 |
Q |
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| T |
43251882 |
cataggacttgtataaattgggagctagaaaaattggagtgacttcactaccaccattagggtgtctacctgctacaaggactttatttggattccatga |
43251981 |
T |
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| Q |
111 |
gaaaggctgtgtcaccagaatcaacaatgatgcacaaggatttaacaagaaaatcaactcggccaccgtgaaactccaaaagcaacttcctggtcttaag |
210 |
Q |
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| T |
43251982 |
gaaaggctgtgtcaccagaatcaacaatgatgcacaaggatttaacaagaaaatcaactcggccaccgtgaaactccaaaagcaacttcctggtcttaag |
43252081 |
T |
|
| Q |
211 |
attgttgtctttaatatttacaaacctctctatgaacttgttcaatccccttcaaaatttggtaagcaatacttttactagaataacatatgatattcat |
310 |
Q |
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| T |
43252082 |
attgttgtctttaatatttacaaacctctctatgaacttgttcaatccccttcaaaatttggtaagcaatacttttactagaataacatatgatattcat |
43252181 |
T |
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| Q |
311 |
ttctttctgtaaaagaatgttacttattctcgtaatctatcttgtgacattcaaaaggttttgcggaggcaaggaaaggctgttgtggaactgggattgt |
410 |
Q |
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| T |
43252182 |
ttctttctgtaaaagaatgttacttattctcgtaatctatcttgtgacattcaaaaggttttgcggaggcaaggaaaggctgttgtggaactgggattgt |
43252281 |
T |
|
| Q |
411 |
ggagacgacatccttattgtgcaatcaaaagtcactaggaacctgttctaatgcaactcagtatgtgttttgggacagtgtccatccttcagaagctgct |
510 |
Q |
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| T |
43252282 |
ggagacgacatccttattgtgcaatcaaaagtcactaggaacttgttctaatgcaactcagtatgtgttttgggacagtgtccatccttcagaagctgct |
43252381 |
T |
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| Q |
511 |
aaccaaattctggccgatgcattgattgtacaaggcataagccttatcggttaaggattcatgtggtgaat |
581 |
Q |
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| T |
43252382 |
aaccaaattctggccgatgcattgattgtacaaggcataagccttatcggttaaggattcatgtggtgaat |
43252452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 4766748 - 4766493
Alignment:
| Q |
31 |
ggagctagaaaaattggagtgacttcactaccaccattagggtgtctacctgctacaaggactttatttggattccatgagaaaggctgtgtcaccagaa |
130 |
Q |
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| T |
4766748 |
ggagctcggaaaattggagtgacttcacttccaccattgggttgcctacctgctgcaaggactttatttggttaccatgagaatggttgtgtcgcaagaa |
4766649 |
T |
|
| Q |
131 |
tcaacaatgatgcacaaggatttaacaagaaaatcaactcggccaccgtgaaactccaaaagcaacttcctggtcttaagattgttgtctttaatattta |
230 |
Q |
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| T |
4766648 |
tcaacactgatgctcaaggatttaacaagaaagtcagctcagctgcatcaaatcttcaaaagcaacttcccggtctaaagattgtgatttttgatattta |
4766549 |
T |
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| Q |
231 |
caaacctctctatgaacttgttcaatccccttcaaaatttggtaagcaatactttt |
286 |
Q |
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| T |
4766548 |
caagcctctctatgaccttgttcaaaacccttcaaatttcggtacgcaacactttt |
4766493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 366 - 521
Target Start/End: Complemental strand, 4766245 - 4766090
Alignment:
| Q |
366 |
aggttttgcggaggcaaggaaaggctgttgtggaactgggattgtggagacgacatccttattgtgcaatcaaaagtcactaggaacctgttctaatgca |
465 |
Q |
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||||||||| |||||| | ||||| || ||||| || || |||| || || ||||| || |||||||||| ||| ||||||||||| |||||||||||| |
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| T |
4766245 |
aggttttgctgaggcaggaaaagggtgctgtggtacaggacttgtagaaacaacatcattgttgtgcaatccaaaatcactaggaacttgttctaatgca |
4766146 |
T |
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| Q |
466 |
actcagtatgtgttttgggacagtgtccatccttcagaagctgctaaccaaattct |
521 |
Q |
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| T |
4766145 |
actcagtatgtgttttgggatagtgttcatccttcagaagctgctaatcaagttct |
4766090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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