View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_15 (Length: 576)
Name: NF2176_low_15
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 7546906 - 7547413
Alignment:
| Q |
1 |
ttgtgctgcaaaacatcatggctttatattaaacaccattgtggtaatctctcagaaggtgctttgaacgagtttgtaatggatgtttacacaagaaatg |
100 |
Q |
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| T |
7546906 |
ttgtgctgcaaaacatcatggctttatattaaacaccattgtggtaatctctcagaaggtgctttgaacgagtttgtaatggatgtttacacaagaaatg |
7547005 |
T |
|
| Q |
101 |
ccacacttttagttattcttgatgaaaccaacaatattaagataacnnnnnnnttgattgacacccttaaaaactggtcgagtgctaacgatctgtttga |
200 |
Q |
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| T |
7547006 |
ccacacttttagttattcttgatgaaaccaacaatattaagataacaaagaaattgattgacacccttaaaaactggtcgagtgctaacgatctgtttga |
7547105 |
T |
|
| Q |
201 |
gaagcttccagttcctatacctgtgttgaagatgtgggtgaaggtagcattacaaagcatttaatttttgtattcagcatgttacagttttaagtttgtt |
300 |
Q |
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| T |
7547106 |
gaagcttccagttcctatacctgtgttgaagatgtgggtgaaggtagcattacaaagcatttaatttttgtattcagcatgttacagttttaagtttgtt |
7547205 |
T |
|
| Q |
301 |
tcttcctattgattatgatatcatactatatgcatgtagaaagaatgcaaacgttttcaggatgttggtgagagagttgattctccaagcttattataca |
400 |
Q |
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| T |
7547206 |
tcttcctattgattatgatatcatactatatgcatgtagaaagaatgcaaacgttttcaggatgttggtgagagagttgattctccaagcttattataca |
7547305 |
T |
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| Q |
401 |
gcctattgtcgtcttacacagaattttcaaagaggaacattggcacaatcttagagcaggtttatccgctttgtagacatttccgtcacagtttacgtgc |
500 |
Q |
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| T |
7547306 |
gcctattgtcgtctaacactgaattttcaaagacgaacattggcacaatcttagagcaggtttagccgctttgtagacatttccgtcataatttacgtgc |
7547405 |
T |
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| Q |
501 |
tatgtgtt |
508 |
Q |
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| T |
7547406 |
tatctgtt |
7547413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 1128130 - 1128608
Alignment:
| Q |
1 |
ttgtgctgcaaaacatcatggctttatattaaacaccattgtggtaatctctcagaaggtgctttgaacgagtttgtaatggatgtttacacaagaaatg |
100 |
Q |
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|||||||| ||| |||||||||| | |||||||| ||| ||||||||||| |||||||||||| | || |||||||||| |||| ||||||||||| || |
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| T |
1128130 |
ttgtgctgtaaagcatcatggctctttattaaacgccactgtggtaatctgtcagaaggtgctctaaaggagtttgtaaatgatgattacacaagaagtg |
1128229 |
T |
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| Q |
101 |
ccacacttttagttattcttgatgaaaccaacaatattaagataacnnnnnnnttgattgacacccttaaaaactggtcgagtgctaacgatctgtttga |
200 |
Q |
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| T |
1128230 |
ccaggcttttagatattctctatgaaactgacaatctgaagacaagaaagaaattgattaagatccttaaaaactggtccattgctaaagatatgttcga |
1128329 |
T |
|
| Q |
201 |
gaagcttccagttcctatacctgtgttgaagatgtgggtgaaggtagcattacaaagcatttaatttttgtattcagcatgttacagttttaagtttgtt |
300 |
Q |
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| T |
1128330 |
gaagcttccaactcctatacctgtggtgaagcaatgggtgaaggtagcttta-aaagcatttaatttttgtatttaacaggttaca-ttttaagttttct |
1128427 |
T |
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| Q |
301 |
tcttcctattgattatgatatcatactatatgcatgtagaaagaatgcaaacgttttcaggatgttggtgagagagttgattctccaagcttattataca |
400 |
Q |
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|| ||||||||||||| |||||||| | |||||||||||| ||||||| | ||| || ||||||||| || ||| ||||||||||| ||| ||||||| |
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| T |
1128428 |
tcctcctattgattattatatcatattgtatgcatgtagatagaatgccagcgtgttaaggatgttgatgggagtgttgattctcctagc---ttataca |
1128524 |
T |
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| Q |
401 |
gcctattgtcgtcttacacagaattttcaaagaggaacattggcacaatcttagagcaggtttatccgctttgtagacatttcc |
484 |
Q |
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| T |
1128525 |
gtctattgttatcttctaaagaattgtcaaagaggaacattggcacaatcttagagcaggttcagctgcttcgtagacatttcc |
1128608 |
T |
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