View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_16 (Length: 570)
Name: NF2176_low_16
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 227 - 570
Target Start/End: Original strand, 25737183 - 25737526
Alignment:
| Q |
227 |
ttggagtctttatcttctcatttgagaacattctagaggttttagagtgagttgttcatggtatggagaaggctttgtaattttgatttgattcattcta |
326 |
Q |
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| T |
25737183 |
ttggagtctttatcttctcatttgagaatattctagaggttttagagtgagttgttcatggtttgaagaaggctttgtaattttgatttgattcattcta |
25737282 |
T |
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| Q |
327 |
attcacnnnnnnncttaatagacaaggtcataggtgttttgaatctcgtatgctactaatcatgtaattggaaaaagacagacacctcatagaagttatg |
426 |
Q |
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| T |
25737283 |
attcactttttttcttaatagacaaggtcatgggtgttttgaatctctgatgctacaaatcatgtaattgggaaaagacagacacctcatagaagttatg |
25737382 |
T |
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| Q |
427 |
gaagctaaagagtcatctatgattgatgctaacttgagataagtatataagttctgcaactcaaacaccaagtttgggataatatatggtctttgaggta |
526 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25737383 |
gaagctaaagagtcatctatgattgatgctaacttgagataagtatataggttttgcaactcaaacaccaagtttgggataatatatggtctttgaggta |
25737482 |
T |
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| Q |
527 |
agaggcaaaagtttcagcaaaatcaaaggataattgggttgcac |
570 |
Q |
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| T |
25737483 |
acgggcaaaagtttcggcaaaatcaaaggataattgggttgcac |
25737526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 38656558 - 38656643
Alignment:
| Q |
191 |
gatgacttctaattgtatgatatttttagctaagttttggagtctttatcttctcatttgagaacattctagaggttttagagtgagtt |
279 |
Q |
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| T |
38656558 |
gatgacttctcatcgtatgatattttt--ctatgttatcgagtcttg-tcttgtcattggagaactttctagagattttagagtgagtt |
38656643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 33469364 - 33469264
Alignment:
| Q |
206 |
tatgatatttttagctaagttttggagtctttatcttctcatttgagaacattctagaggttttagagtgagttgttcatggtatggagaaggctttgta |
305 |
Q |
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|||||| ||||||| || ||||||||||||| ||| ||||||| ||| | |||||||||||| |||||||| ||||||| ||| ||| | |||||| |
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| T |
33469364 |
tatgatgtttttagttacattttggagtctttttctatgcatttgaagacaatatagaggttttagtgtgagttgctcatggtttggggaatgttttgta |
33469265 |
T |
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| Q |
306 |
a |
306 |
Q |
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| T |
33469264 |
a |
33469264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 37081799 - 37081848
Alignment:
| Q |
384 |
aatcatgtaattggaaaaagacagacacctcatagaagttatggaagcta |
433 |
Q |
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|||||||||||| || |||| ||||||||||| |||||||||||||||| |
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| T |
37081799 |
aatcatgtaattcgacaaagcaagacacctcatggaagttatggaagcta |
37081848 |
T |
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