View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_18 (Length: 549)
Name: NF2176_low_18
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_18 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 44927029 - 44927562
Alignment:
| Q |
16 |
aaaatcacacatttctcatgaaccatgatcatatgttgcttctgctcaattgcaacatttgaacaaggacaaccattcattatcttcatcatttttagtg |
115 |
Q |
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| T |
44927029 |
aaaatcacatatttctcatgaaccatgatcatatgttgcttctgctcaattgcaacatttgaacaaggacaaccattcattatcttcatcatttttagtg |
44927128 |
T |
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| Q |
116 |
attagttaggttttcacaagaataaaaaatgtttctgttaaacctagatttggttaaattttgtagtaaggtctaaaatttaacctataaaagtatgatt |
215 |
Q |
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| T |
44927129 |
attagttaggttttcacaagaataaaaaatgtttctgttaaacctagatttggttaaattttgtagtaaggtctaaaatttaacctataaaagtatgatt |
44927228 |
T |
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| Q |
216 |
agattgttaactatattgaatctacctttagataaataaatcttgtgctgttaactgtgctgcaataataactctagaaactcaccagaatgtccatggt |
315 |
Q |
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| T |
44927229 |
agattgttaactatattgaatttacctttagataaataaatcttgtgctgttaactgtgctgcaataataactctagaaactcaccagaatgtccatggt |
44927328 |
T |
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| Q |
316 |
tcaatcttgaaaactaatttattaacatgctaacatttgcctataaaaatccatgcaagaatagccactccttaattttgaagcatcttgcaagcgtatg |
415 |
Q |
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| T |
44927329 |
tcaatcttgaaaactaatttattaacatgctaacatttgcctataaaaatccgtgcaagaatagcaactccttaattttgaagcatcttgcaagcgtatg |
44927428 |
T |
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| Q |
416 |
attgcatggtttggtttcgcggtatgatgcagactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggt |
515 |
Q |
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| T |
44927429 |
attgcatggtttggtttcacggtatgatgcagactctcgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggt |
44927528 |
T |
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| Q |
516 |
cttccgtctgctgagaagagggaaacgatcttga |
549 |
Q |
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| T |
44927529 |
cttccgtctgctgagaagagggaaacgatcttga |
44927562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 45988858 - 45989097
Alignment:
| Q |
21 |
cacacatttctcatgaaccatgatcatatgttgcttctgctcaattgcaa-catttgaacaaggacaaccattcattatcttcatcatttttagtgatta |
119 |
Q |
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| T |
45988858 |
cacacatttgccatgaatcatgttcacctgttgcttctactcaattgcaatcatttgaacaaggacaagcattcattatcttcaccatcttcattgatta |
45988957 |
T |
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| Q |
120 |
gttaggttttcacaagaataaaaaatgtttctgttaaacctagatttggttaaattttgt----agt-aaggtctaaaatttaacctataaaagtatgat |
214 |
Q |
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| T |
45988958 |
gttaggttatcataagaaacaaaaaagtttctgataaacatagattacgtaaaattttgttttaagtaaaggtctaaaatttaacctttgaaaatatgat |
45989057 |
T |
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| Q |
215 |
tagattgttaactatattgaatctacctttagataaataa |
254 |
Q |
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| T |
45989058 |
taaattgttcactagattgagtctaccgttagataaataa |
45989097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 416 - 549
Target Start/End: Original strand, 45994118 - 45994251
Alignment:
| Q |
416 |
attgcatggtttggtttcgcggtatgatgcagactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggt |
515 |
Q |
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| T |
45994118 |
attgcatggtttggtttcatgatatgatgcagactattgtttttgagatatgtgactgacatttctgttcatggcaatcttgagcaggatcatggttggt |
45994217 |
T |
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| Q |
516 |
cttccgtctgctgagaagagggaaacgatcttga |
549 |
Q |
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| T |
45994218 |
cttccttctgctgaaaacagggaaacaatcttga |
45994251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 45993764 - 45994044
Alignment:
| Q |
31 |
tcatgaaccatgatcatatgttgcttctgctcaattgcaa-catttgaacaaggacaaccattcattatcttcatcatttttagtgattagttaggtttt |
129 |
Q |
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| T |
45993764 |
tcatgaatcatgttcatctgttgcttctgcccgattgcaatcatttgaacaaggaccagcatttattatgttcatcatcttcattgatttgttaggtcct |
45993863 |
T |
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| Q |
130 |
cacaagaataaaaaatgtttctgttaaacctagatttggttaaattttgt----agtaa-ggtctaaaatttaacctataaaagtatgattagattgtta |
224 |
Q |
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| T |
45993864 |
cacaagaaacaaaatagtttctgataaaaatcaatttcattaaattttgttttaagtaaaggtctaaaatttaaccttttaaaatatgattaaattgtct |
45993963 |
T |
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| Q |
225 |
actatattgaatctacctttagataaataaatcttgtgctgttaactgtgctgcaataataactctagaaactcaccagaa |
305 |
Q |
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| T |
45993964 |
accagattgagtctacctttagataaataaaccttgtgcagttaactgtgcaagaataacaagtctggaaactcaccagaa |
45994044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 438 - 549
Target Start/End: Original strand, 44935910 - 44936021
Alignment:
| Q |
438 |
tatgatgcagactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggtcttccgtctgctgagaagaggg |
537 |
Q |
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| T |
44935910 |
tatgatgcagactgttgtttttgagatctgtgattgacatttgtgttcatggcaattttgagtaggatcatggttggtcttccgtctgctgataacaggg |
44936009 |
T |
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| Q |
538 |
aaacgatcttga |
549 |
Q |
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| T |
44936010 |
aaacaatcttga |
44936021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 44935472 - 44935727
Alignment:
| Q |
21 |
cacacatttctcatgaaccatgatcatatgttgcttctgctcaattgcaa-catttgaacaaggacaaccattcattatcttcatcatttttagtgatta |
119 |
Q |
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| T |
44935472 |
cacacatttgtcctgaatcatgatcatctgttgcttctgctcaattgcaatcatttgaacaaggacaaacattcattactttcatgatattcagtgattg |
44935571 |
T |
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| Q |
120 |
gttaggttttcacaagaataaaaaatgtttctgttaaacctagatttggttaaattt---tgtagt-aaggtctaaaatttaacctataaaagtatgatt |
215 |
Q |
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| T |
44935572 |
gttaggttctcataaga--aacaaaagcttttcataaacatagatttggtcgattttttctgaagtaaaggtctacaatttaacctttgaaaatatgatt |
44935669 |
T |
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| Q |
216 |
agattgttaactatattgaatctacctttagataaataaatcttgtgctgttaactgt |
273 |
Q |
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| T |
44935670 |
aaattgttcactagattgattctagctttagataaatgaactttgtgcagtttactgt |
44935727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 425 - 549
Target Start/End: Original strand, 45989277 - 45989401
Alignment:
| Q |
425 |
tttggtttcgcggtatgatgcagactcttgtttttgaaatctgtggatgacatttctgttcatggcaattttgagcaggataatggttggtcttccgtct |
524 |
Q |
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| T |
45989277 |
tttggtttcatgatatgatttagactattgtttttgagatatatgattgacatttctgctcatggcaatctcgagcaggatcatggttggtcttccttct |
45989376 |
T |
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| Q |
525 |
gctgagaagagggaaacgatcttga |
549 |
Q |
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||||| || |||||||| ||||||| |
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| T |
45989377 |
gctgaaaacagggaaactatcttga |
45989401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 545
Target Start/End: Complemental strand, 11093793 - 11093743
Alignment:
| Q |
495 |
ttgagcaggataatggttggtcttccgtctgctgagaagagggaaacgatc |
545 |
Q |
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| T |
11093793 |
ttgagcaggatcatggttggtcttccatctgctgagaatagggaaatgatc |
11093743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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