View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_19 (Length: 543)
Name: NF2176_low_19
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 21600278 - 21599767
Alignment:
| Q |
19 |
taaacttcagtaatatgtgaaaggcttttgtgtgctcacgatgcttgtatttcaaatgtttctaaacccttctaagacgtaaaaatcctagaatatcttc |
118 |
Q |
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| T |
21600278 |
taaacttcagtaatatgtgaaaggcttttgtgtgctcacgatgcttgtatttcaaatgtttctaaacccttctaagacgtaaaaaccccataatatcttc |
21600179 |
T |
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| Q |
119 |
tgaatattggtcaccagactcctcttttcaagggagcgggttggtgatccttatccaaatcccaactcaattgtccatgacagaccttggaggtggtacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21600178 |
tgaatattggtcaccagactcctcttttcaagggagcgggttggtgatccttatccaaatcccaactcaattgtccatgacagaccttggaggtggtacc |
21600079 |
T |
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| Q |
219 |
agaggattatcaccaatctttggtacttcaatcaaaatttgattcggattggtttgtgcttctttaagtgtatcttcttctaactgagccaaacaaattg |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
21600078 |
agaggattatcaccaatctctggtacttcaatcaaaatttgattcggattggtttgtgcttccttaagtgtatcttcttctaattgagccaaacaaattg |
21599979 |
T |
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| Q |
319 |
ccttctggttagctcttactgtccttttgatctcaagatcatgaagtaattcatccctcgggattttacctcgcataaacaaccaaaaaacatcttagta |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21599978 |
ccttctagttagctcttactgtccttttgatctcaagatcatgaagtaattcatccctcgggattttacctcgcataaacaaccaaaagacatcttagta |
21599879 |
T |
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| Q |
419 |
acgctacacaataaaagattaaaataagagctggaatgtgtgtgtgtatatatcaaatttttcaatctattagacnnnnnnntgtaaacataccgaagca |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
21599878 |
acgctacacaataaaagattaaaataagagctggaatgtgtgtgtgt--atatcaaatttttcaatctattagacaaaaaaatgtaaacataccgaagta |
21599781 |
T |
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| Q |
519 |
ataaaataattcat |
532 |
Q |
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|||||||||||||| |
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| T |
21599780 |
ataaaataattcat |
21599767 |
T |
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