View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_2 (Length: 748)
Name: NF2176_low_2
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 373 - 734
Target Start/End: Original strand, 31342964 - 31343325
Alignment:
| Q |
373 |
ttctaccctttagtgagtttgacattgtatttgtcaactaagtagccatcatttaatcctcctnnnnnnngaagcaaaccaatatcctcctaagggagtg |
472 |
Q |
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| T |
31342964 |
ttctaccctttagtgagtttgacattgtatttgtcaactaagtagccatcatttaatcctcctaaaaaaggaagcaaaccaatatcctcctaagggagtg |
31343063 |
T |
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| Q |
473 |
gaatcttaacactcctattgatcattaaacatacatgagaatattaaatagtattacacgttgaaaagtattatttcatttgagtcaggaaactatattc |
572 |
Q |
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| T |
31343064 |
gaatcttaacacttctattcatcattaaccatacatgagaatattaaatagtattacacgttgaaaagtattatttcatttgagccaggaaactatattc |
31343163 |
T |
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| Q |
573 |
agcataataataaaaaacttggagtcaccacaatttaaagtttaaaacaagaacaataagttactaatccnnnnnnnctgctgaaatagtaaacaaatca |
672 |
Q |
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| T |
31343164 |
agcataataataaaaaacttggagtcaccacaatttaaagtttaaaacaagaacaataagttactaatccaaaaaaactgctgaaatagtaaacaaatca |
31343263 |
T |
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| Q |
673 |
gtactttctcaatacaaaataaattgattcattcaacatatagcacactaaatacaagctct |
734 |
Q |
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| T |
31343264 |
gtactttctcaatacaaaataaattgattcattcaacatatagcacactaaatacaagctct |
31343325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 172 - 337
Target Start/End: Original strand, 31342790 - 31342955
Alignment:
| Q |
172 |
aaaaagctgagtagaattcagtgatgttgctacctgaataagaagagcataattttggtcaactagctagtagagaaagaagccctggttacataacgat |
271 |
Q |
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| T |
31342790 |
aaaaagctgagtagaattcagtgatgttgatacctgaataacaaaagcataattttggttaactagctagtagagaaagaagccctggttacataacgat |
31342889 |
T |
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| Q |
272 |
ggacagatattaataatttaatggatacttactccatcaacttgcactcttttattagtacgaata |
337 |
Q |
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| T |
31342890 |
ggaaagatattaataatttaatggatacttactccatcaacttgcactcttttattagtatgaata |
31342955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 138 - 317
Target Start/End: Original strand, 36164692 - 36164870
Alignment:
| Q |
138 |
ccaagtaaaaactgttgcgccagattgcagaagaaaaaagctgagtagaattcagtgatgttgctacctgaataagaagagcataattttggtcaactag |
237 |
Q |
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| T |
36164692 |
ccaagtaaaaactgttgagccagattgcagaagaaaaca-ctcggtagaattcaatgatgctgccacctgaacaataaaagcataactttggtcaa---- |
36164786 |
T |
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| Q |
238 |
ctagtagagaaagaagccctggttacataac---gatggac-agatattaataatttaatggatacttactccatcaacttgca |
317 |
Q |
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| T |
36164787 |
gtagtagagaaaaaagccctagccacataaccaagggggacaaaaaaggaataatttaatggatacttactgcatcaacttgca |
36164870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 36165429 - 36165504
Alignment:
| Q |
360 |
aatacctgaacaattctaccctttagtgagtttgacattgtatttgtcaactaagtagccatcatttaatcctcct |
435 |
Q |
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| T |
36165429 |
aatacctgaacaggtctaccctttagtgagttggacattgtagtagccaaccgagtagccatcttttggtcctcct |
36165504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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