View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_20 (Length: 511)
Name: NF2176_low_20
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 44927556 - 44928043
Alignment:
| Q |
1 |
atcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgaccttaaggttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927556 |
atcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgaccttaaggttc |
44927655 |
T |
|
| Q |
101 |
agtttgtttgtcattctctttttcatatattccctacttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgcaccac |
200 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927656 |
agtttgtttgtcattctctttttcatat--tccctgcttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgcaccac |
44927753 |
T |
|
| Q |
201 |
tgcagcctatcgccccattaaggagctaatgcaacaggagaaggaaaaagaaataatagatgctaaactattacatataataatgtgattgttaaaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927754 |
tgcagcctatcgccccattaaggagctaatgcaacaggagaaggaaaaagaaatggtagatgctaaactattacatataataatgtgattgttaaaatga |
44927853 |
T |
|
| Q |
301 |
tctccatcaaatgtatagtgttcatgtgcgctgtaaagctaagtaataacattaaccaccacttatttcagaaaaagaagaaaaaggaggcagaagttga |
400 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44927854 |
tctccatcaaatgtatagtgttcatgtgcactgtaaagctaagtaataacattaaccaccacttatttcagaaaaagaagaaaaaggaggcagaagttga |
44927953 |
T |
|
| Q |
401 |
aaaatcagaagatgtttccaatactggagatgaagaaaaaagtgatcaagtgattgccctcaggcctctaaacatggaagacatgagaca |
490 |
Q |
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| T |
44927954 |
aaaatcagaagatgtttccaatactggagatgaagaaaaaagtgatcaagtgattgccctcaggcctctaaacatggaagacatgagaca |
44928043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45989395 - 45989614
Alignment:
| Q |
1 |
atcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgaccttaaggttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
45989395 |
atcttgaaaactcttctagctaaggataaacatgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagtgatcttaaggttc |
45989494 |
T |
|
| Q |
101 |
agtttgtttgtcattctctttttcatatattccctacttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgcaccac |
200 |
Q |
| |
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| |||||| |||||||||| |||| || || ||||||||| ||||| |||||| |||| ||||||||||||| |||||||||||||||||||| || |
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| T |
45989495 |
attttgttggtcattctctatttc-ta-gttacctacttct--tttgtggtgata---atctattgacattaatttatgtaaacagaacttgtgcacgac |
45989587 |
T |
|
| Q |
201 |
tgcagcctatcgccccattaaggagct |
227 |
Q |
| |
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|||||| ||| || || |||||||||| |
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| T |
45989588 |
tgcagcatattgcgcccttaaggagct |
45989614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 44936015 - 44936260
Alignment:
| Q |
1 |
atcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacagaaggatatagtggaagcgaccttaaggttc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
44936015 |
atcttgaaaactattctagctaaggaaaaatctgaaaatatgaacttcgaagagctttcaactatgacagaaggatatagcggaagtgatcttaaggtta |
44936114 |
T |
|
| Q |
101 |
agtttgtttgtcattctctttttcatatattccctacttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgcaccac |
200 |
Q |
| |
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| ||| || || ||||| |||| || |||||||||| ||| || |||||||| || ||||||||||||||||||||||||||||||||| || |
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| T |
44936115 |
attttattgatctttctcaatttc-tag-ttccctactt---gttggtggtgataat---ctattgacattaatttctgtaaacagaacttgtgcatgac |
44936206 |
T |
|
| Q |
201 |
tgcagcctatcgccccattaaggagctaatgcaacaggagaaggaaaaagaaat |
254 |
Q |
| |
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|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
44936207 |
tgcagcatatcgcccccttaaggagctaatacaacaggagaaggaaaaagaaat |
44936260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45994245 - 45994349
Alignment:
| Q |
1 |
atcttgaaaactcttctagctaaggaaaaacacgaagatatagacttcaaagagctttcaactatgacag----aaggatatagtggaagcgaccttaag |
96 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||||| || |||||| |
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| T |
45994245 |
atcttgaaaactcttatagctaaggataaacatgaagatttagacttcaaagagctttcaactatgacagaattaaggatacagtggaagtgatcttaag |
45994344 |
T |
|
| Q |
97 |
gttca |
101 |
Q |
| |
|
||||| |
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|
| T |
45994345 |
gttca |
45994349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 133 - 254
Target Start/End: Original strand, 45994358 - 45994476
Alignment:
| Q |
133 |
cctacttctggtttgtcgtgataatgatctcttgacattaatttctgtaaacagaacttgtgcaccactgcagcctatcgccccattaaggagctaatgc |
232 |
Q |
| |
|
|||| ||||||||||| ||||||| || |||||||| |||| |||||| |||||||||||| |||||||| ||||||||| ||||||||||||| | |
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| T |
45994358 |
cctatttctggtttgtggtgataac---ctattgacattgatttatgtaaagagaacttgtgcatgactgcagcatatcgcccccttaaggagctaatac |
45994454 |
T |
|
| Q |
233 |
aacaggagaaggaaaaagaaat |
254 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
45994455 |
aacaggagaaagaaaaagaaat |
45994476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 488
Target Start/End: Original strand, 44936329 - 44936459
Alignment:
| Q |
358 |
accacttatttcagaaaaagaagaaaaaggaggcagaagttgaaaaatcagaagatgtttccaatactggagatgaagaaaaaagtgatcaagtgattgc |
457 |
Q |
| |
|
|||| |||||| ||| |||||||||||||| | |||||||||||| | |||||| | ||||| | || || ||||| ||| |||||||||||||| |
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| T |
44936329 |
accatttattttagacaaagaagaaaaaggtgacagaagttgaaatcttagaagaagcttccattgctaccgaagaagataaagaagatcaagtgattgc |
44936428 |
T |
|
| Q |
458 |
cctcaggcctctaaacatggaagacatgaga |
488 |
Q |
| |
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|||||||||| |||||||||| ||||||||| |
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| T |
44936429 |
cctcaggcctttaaacatggaggacatgaga |
44936459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 45989794 - 45989840
Alignment:
| Q |
444 |
gatcaagtgattgccctcaggcctctaaacatggaagacatgagaca |
490 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||||||||||||||||||| |
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|
| T |
45989794 |
gatcaagtgatttccctccggcctttgaacatggaagacatgagaca |
45989840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 492
Target Start/End: Original strand, 27404030 - 27404230
Alignment:
| Q |
281 |
taatgtgattgttaaaatgatctccatcaaatgtatagtgttcatgtgcgctgtaaagctaagtaataacattaaccaccacttatttcagaaaaagaag |
380 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| || |||| |||| | |||||| |||||||||||| |||||||||||| |||||||| |
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|
| T |
27404030 |
taatgtgattgttaaaatgatctctatccaatgtgtattgtt--tgtgtgatgtaaaactaagtaataac---------cacttatttcaggaaaagaag |
27404118 |
T |
|
| Q |
381 |
aaaaaggaggcagaagttgaaaaatcagaagatgtttccaatactggagatgaagaaaaaagtgatcaagtgattgccctcaggcctctaaacatggaag |
480 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||| ||| ||||| ||| ||| | | |||||||| |||| |||| |||| |||||||||||| |
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| T |
27404119 |
aaagaggaggcagaatttgaaatcgcagaagatgcttctgatactatagaagaacatatcgatgatcaagggatttcccttgcgcctttaaacatggaag |
27404218 |
T |
|
| Q |
481 |
acatgagacatg |
492 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27404219 |
acatgagacatg |
27404230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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