View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_21 (Length: 504)

Name: NF2176_low_21
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_21
NF2176_low_21
[»] chr3 (1 HSPs)
chr3 (17-494)||(1530563-1531040)
[»] chr5 (5 HSPs)
chr5 (17-494)||(22475674-22476151)
chr5 (207-435)||(26849093-26849310)
chr5 (17-206)||(26849702-26849889)
chr5 (201-306)||(15425488-15425593)
chr5 (431-494)||(26842341-26842404)
[»] chr1 (4 HSPs)
chr1 (203-492)||(8425218-8425512)
chr1 (203-344)||(30235367-30235508)
chr1 (396-494)||(30234303-30234401)
chr1 (349-378)||(30235018-30235047)
[»] chr4 (2 HSPs)
chr4 (203-343)||(5690017-5690159)
chr4 (203-328)||(25154144-25154269)
[»] chr2 (2 HSPs)
chr2 (203-341)||(29759051-29759189)
chr2 (349-378)||(29758710-29758739)
[»] chr7 (3 HSPs)
chr7 (28-139)||(30434431-30434543)
chr7 (395-494)||(39327815-39327914)
chr7 (276-344)||(39327286-39327354)


Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Complemental strand, 1531040 - 1530563
Alignment:
Q  17 agtagcatgactaattaaccctacacatgaaaaggagaaagcatgaagtatacccaaaagttatttgagttcttctgatggccagtaactaaatcatgat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1531040 agtagcatgactaattaaccctacacatgaaaaggagaaagcatgaagtatacccaaaagttatttgagttcttctgatggccagtaactaaatcatgat 1530941  T
Q  117 tggcatgcatcttctttgcattgtcggttgagttagaaatcacaacccaccacattatcatatacattcatatcatctatttagatttgtattaaaattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1530940 tggcatgcatcttctttgcattgtcggttgagttagaaatcacaacccaccacattatcatatacattcatatcatctatttagatttgtattaaaattt 1530841  T
Q  217 ccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggccaaagctcagcaca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1530840 ccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggccaaagctcagcaca 1530741  T
Q  317 ctcgttaccaattggtccagtgatagcataatctttcatttctcccttaggattcacaataatgccgtcattatctttgaagtacatgaagacacgatcc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1530740 ctcgttaccaattggtccagtgatagcataatctttcatttctcccttaggattcacaataatgccgtcattatctttgaagtacatgaagacacgatcc 1530641  T
Q  417 ttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttcttc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1530640 ttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttcttc 1530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 494
Target Start/End: Original strand, 22475674 - 22476151
Alignment:
Q  17 agtagcatgactaattaaccctacacatgaaaaggagaaagcatgaagtatacccaaaagttatttgagttcttctgatggccagtaactaaatcatgat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22475674 agtagcatgacaaattaaccctacacatgaaaaggagaaagcatgaagtatacccaaaagttatttgagttcttctgatggccattaactaaatcatgat 22475773  T
Q  117 tggcatgcatcttctttgcattgtcggttgagttagaaatcacaacccaccacattatcatatacattcatatcatctatttagatttgtattaaaattt 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22475774 tggcatgcatcttctttgcattgccggttgagttagaaatcacaacccaccacattatcatatacattcatatcatctatttagatttgtattaaaattt 22475873  T
Q  217 ccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggccaaagctcagcaca 316  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22475874 ccaaaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggtattggcagcacttgcaatcataggccaaagctcagcaca 22475973  T
Q  317 ctcgttaccaattggtccagtgatagcataatctttcatttctcccttaggattcacaataatgccgtcattatctttgaagtacatgaagacacgatcc 416  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||     
T  22475974 ctcgttgccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacgccggcattatctttgaagtacatgaagacacaatca 22476073  T
Q  417 ttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttcttc 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  22476074 ttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcatgagatcaggttttcccttcttc 22476151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 207 - 435
Target Start/End: Complemental strand, 26849310 - 26849093
Alignment:
Q  207 attaaaatttccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggccaaa 306  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26849310 attaaaatttccactaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggccaaa 26849211  T
Q  307 gctcagcacactcgttaccaattggtccagtgatagcataatctttcatttctcccttaggattcacaataatgccgtcattatctttgaagtacatgaa 406  Q
    |||||||||| || |||||||||||||||||||||           |||||||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  26849210 gctcagcacattcattaccaattggtccagtgata-----------catttctcccttaggattcacaataacgccggcattatcttcgaagtacatgaa 26849122  T
Q  407 gacacgatccttttggcgccaaggcttac 435  Q
    ||||| |||||||||||| ||||||||||    
T  26849121 gacacaatccttttggcgtcaaggcttac 26849093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 26849889 - 26849702
Alignment:
Q  17 agtagcatgactaattaaccctacacatgaaaaggagaaagcatgaagtatacccaaaagttatttgagttcttctgatggccagtaactaaatcatgat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  26849889 agtagcatgactaattaaccctacacatgaaaaggagaaagcatgaagtatacccaaaagttatttgagttcttct----gccagtaactaaatcatgat 26849794  T
Q  117 tggcatgcatcttctttgcattgtcggttgagttagaaatcac--aacccaccacattatcatatacattcatatcatctatttagatttgt 206  Q
    ||||||||||||||||| ||||| | |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||    
T  26849793 tggcatgcatcttctttacattgccagttgagttagaaatcacataacccaccacattatcatatacattcatatcatctatttaaatttgt 26849702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 15425593 - 15425488
Alignment:
Q  201 atttgtattaaaatttccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcatag 300  Q
    ||||||||||||| | |||||||| |||||| | ||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||    
T  15425593 atttgtattaaaactgccacaaaagggcatcggaactacttgcgatcttgaaacagaatcaacactcatacaatggcattggcagcacttgcaatcctag 15425494  T
Q  301 gccaaa 306  Q
    ||||||    
T  15425493 gccaaa 15425488  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 431 - 494
Target Start/End: Complemental strand, 26842404 - 26842341
Alignment:
Q  431 cttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttcttc 494  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| | |||||||||    
T  26842404 cttacgctgacgaacgatgacaacacgcaaaaccttcttcctgagatcaggtattcccttcttc 26842341  T

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Target: chr1 (Bit Score: 168; Significance: 8e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 203 - 492
Target Start/End: Complemental strand, 8425512 - 8425218
Alignment:
Q  203 ttgtattaaaatttccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggca-------gcacttgcaat 295  Q
    ||||||||||||| ||||||  ||||||| ||||||| ||||||||||||||| ||||||||||||||  ||||||||||||       ||| |||||||    
T  8425512 ttgtattaaaattgccacaa--tggcatcggcactacttgcaatcttgaaacagaatccacactcatattatggcattggcacttggcagcatttgcaat 8425415  T
Q  296 cataggccaaagctcagcacactcgttaccaattggtccagtgatagcataatctttcatttctcccttaggattcacaataatgccgtcattatctttg 395  Q
    | |||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||  ||||||||| |    
T  8425414 cctaggccaaagatcagcacactccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattatcttcg 8425315  T
Q  396 aagtacatgaagacacgatccttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttct 492  Q
    |||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  8425314 aagtacatgaagacaccatcctttgggcgccaaggcttgcactgacgaacgatgacagctggcaaaaccttcttcctgagatcaggttttcccttct 8425218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 203 - 344
Target Start/End: Complemental strand, 30235508 - 30235367
Alignment:
Q  203 ttgtattaaaatttccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggc 302  Q
    |||||||||||||  |||| ||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  30235508 ttgtattaaaattgtcacacaatggcatcggcactacttgcaatcttgaaacagaatccacgctcatacaatggcattggcagcacttgcaatcctaggc 30235409  T
Q  303 caaagctcagcacactcgttaccaattggtccagtgatagca 344  Q
    ||||| |||||||| || ||| ||||||| || |||||||||    
T  30235408 caaagatcagcacattccttagcaattggaccggtgatagca 30235367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 396 - 494
Target Start/End: Complemental strand, 30234401 - 30234303
Alignment:
Q  396 aagtacatgaagacacgatccttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttcttc 494  Q
    ||||||||||||||||  |||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||    
T  30234401 aagtacatgaagacaccgtcctttcggcgccatggcttacgctgacgaacgatgacagctggcaaaaccttcttcctgagatcaggctttcccttcttc 30234303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 30235047 - 30235018
Alignment:
Q  349 ctttcatttctcccttaggattcacaataa 378  Q
    ||||||||||||||||||||||||||||||    
T  30235047 ctttcatttctcccttaggattcacaataa 30235018  T

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Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 5690017 - 5690159
Alignment:
Q  203 ttgtattaaaatttccacaaaatggcatcagcactacctgcaat--cttgaaacataatccacactcatacaatggcattggcagcacttgcaatcatag 300  Q
    ||||||||||| | |||||||| |||||||| ||||| ||||||  ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||    
T  5690017 ttgtattaaaactgccacaaaagggcatcagaactacttgcaatatcttgaaacagaatcaacactcatacaatggcattggcagcacttgcaatcctag 5690116  T
Q  301 gccaaagctcagcacactcgttaccaattggtccagtgatagc 343  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||    
T  5690117 gccaaagatcagcacactccttaccaattggtcctgtgatagc 5690159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 25154269 - 25154144
Alignment:
Q  203 ttgtattaaaatttccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggc 302  Q
    ||||||||||| | |||||||| |||||| | ||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||    
T  25154269 ttgtattaaaactgccacaaaagggcatcggaactacttgcaatcttgaaacagaatcaacactcatgcaatggcattggcagcacttgcaatcctaggc 25154170  T
Q  303 caaagctcagcacactcgttaccaat 328  Q
    ||||| |||||| |||| ||| ||||    
T  25154169 caaagatcagcatactccttatcaat 25154144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 203 - 341
Target Start/End: Complemental strand, 29759189 - 29759051
Alignment:
Q  203 ttgtattaaaatttccacaaaatggcatcagcactacctgcaatcttgaaacataatccacactcatacaatggcattggcagcacttgcaatcataggc 302  Q
    ||||||||||| | |||||||| |||||  | ||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |||||    
T  29759189 ttgtattaaaactgccacaaaagggcattggaactacttgcaatcttgaaacagaatcaacactcatacaatgacattggcagcacttgcaatcctaggc 29759090  T
Q  303 caaagctcagcacactcgttaccaattggtccagtgata 341  Q
    ||||| ||||||||||| || ||||||||||| ||||||    
T  29759089 caaagatcagcacactcctttccaattggtcctgtgata 29759051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 29758739 - 29758710
Alignment:
Q  349 ctttcatttctcccttaggattcacaataa 378  Q
    ||||||||||||||||||||||||||||||    
T  29758739 ctttcatttctcccttaggattcacaataa 29758710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 30434431 - 30434543
Alignment:
Q  28 taattaaccctacacatgaaaaggagaaag-catgaagtatacccaaaagttatttgagttcttctgatggccagtaactaaatcatgattggcatgcat 126  Q
    ||||||||| | ||||||| |||||||||  || |||||||||| | |||||| |||||||||||| |||||||  ||||||||||||||||| ||||||    
T  30434431 taattaaccttgcacatgagaaggagaaacacacgaagtataccaagaagttaattgagttcttcttatggccatgaactaaatcatgattggaatgcat 30434530  T
Q  127 cttctttgcattg 139  Q
    |||||||||||||    
T  30434531 cttctttgcattg 30434543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 494
Target Start/End: Original strand, 39327815 - 39327914
Alignment:
Q  395 gaagtacatgaagacacgatccttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttccccttcttc 494  Q
    |||||||||||| ||||  |||||| ||||||| || ||||||||||||||||||||  | || |  |||||||| | ||||||||| || |||||||||    
T  39327815 gaagtacatgaaaacaccgtcctttcggcgccatggtttacgctgacgaacgatgacggcaggaagcaccttcttacggagatcaggctttcccttcttc 39327914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 39327286 - 39327354
Alignment:
Q  276 gcattggcagcacttgcaatcataggccaaagctcagcacactcgttaccaattggtccagtgatagca 344  Q
    ||||| ||||||||||||||| ||||||| || ||||||||||| ||  ||||||| ||||| ||||||    
T  39327286 gcattagcagcacttgcaatcctaggccatagatcagcacactccttcgcaattggaccagtaatagca 39327354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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