View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_22 (Length: 497)
Name: NF2176_low_22
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 241 - 476
Target Start/End: Complemental strand, 4138854 - 4138619
Alignment:
| Q |
241 |
cttcatctgtttcctatgaaatttgatcaaattataataggattcatataactactagttgtataagttgaaattatcttctcaatctaatattttaaga |
340 |
Q |
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| T |
4138854 |
cttcatctgtttcctatgaaatttgatcaaattataataggattcatataactactagttgtataagttgaaattatcttctcaatctaatattttaaga |
4138755 |
T |
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| Q |
341 |
atctctttcgtttaacttcttcgtagtccccaggcataacttaagtcgttgagccgagacatctaaaatagtttgaaaatggcctataccacatcaatga |
440 |
Q |
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| T |
4138754 |
atctctttcgtttaacttcttcgtagtccccaggcataacttaagtcgttgagccgagacatctaaaatagtttggaaatggcctataccacatcaatga |
4138655 |
T |
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| Q |
441 |
aaccatattcaaaagtgattatctaatgataagtat |
476 |
Q |
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| T |
4138654 |
aaccatattcaaaagtgattatctaatgataagtat |
4138619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 4139099 - 4138884
Alignment:
| Q |
1 |
tgaacagccatacagaacttggtaccactttcagcccctaaaaaattggatgaatggtagagtatcatctgaagcaccattttccatttactttttgcac |
100 |
Q |
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| T |
4139099 |
tgaacagccatacagaacttggtaccactttcagcccctaaaaaattggatgaatggtagagtatcatctaaagcaccattttccatttactttttgcac |
4139000 |
T |
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| Q |
101 |
atgtgtaaatgttatatctaactcttttatgtatcatttgacatgttttgctgactaaaattgaaaac---------catcttgcagatcctaatggtat |
191 |
Q |
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| T |
4138999 |
atgtgtaaatgttatatctaactcttttatgtatcatttgacatgttttgctgactaaaattgaaaaccatcatcttcatcatgcagatcctaatggtat |
4138900 |
T |
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| Q |
192 |
gcttcatactcttagc |
207 |
Q |
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| T |
4138899 |
gcttcatactcttagc |
4138884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4143700 - 4143642
Alignment:
| Q |
1 |
tgaacagccatacagaacttggtaccactttcagcccctaaaaaattggatgaatggta |
59 |
Q |
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|||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4143700 |
tgaacaaccatatagaacttggtaccactttcagcccaaaaaaaattggatgaatggta |
4143642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 4143557 - 4143458
Alignment:
| Q |
112 |
ttatatctaactctttt--atgtatcatttgacatgttttgctgactaaaattgaaaaccat---------cttgcagatcctaatggtatgcttcatac |
200 |
Q |
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| T |
4143557 |
ttatatctaactcttttttatgtatcacttgacatgttttt-tgaccaaaattcaaaaccattaccttcatcatgcagatcctaatggtatgcttcatac |
4143459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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