View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_24 (Length: 494)

Name: NF2176_low_24
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_24
NF2176_low_24
[»] chr2 (3 HSPs)
chr2 (129-482)||(9809348-9809703)
chr2 (129-482)||(16248334-16248679)
chr2 (129-375)||(45623117-45623362)
[»] chr7 (4 HSPs)
chr7 (20-213)||(39939059-39939252)
chr7 (264-482)||(39939921-39940139)
chr7 (241-292)||(27128904-27128956)
chr7 (129-175)||(36325328-36325374)
[»] chr8 (2 HSPs)
chr8 (129-403)||(34578464-34578740)
chr8 (230-403)||(7934943-7935117)
[»] chr3 (2 HSPs)
chr3 (128-237)||(52623568-52623679)
chr3 (129-175)||(54725462-54725508)
[»] chr4 (1 HSPs)
chr4 (129-482)||(31888649-31888994)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 129 - 482
Target Start/End: Original strand, 9809348 - 9809703
Alignment:
Q  129 gagtgatgataggtggacatacttaggtggcataccacatttgtaccgctcttaggaaatgatcccctcgtgccttttaaaacaatgttgt--gttttgt 226  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||  || ||||    
T  9809348 gagtgatgataggtggacatgcttaggtggcataccacctttgtaccactcttaggaaatgatcccctcatgccttttaaaacaatgttgtttgtcttgt 9809447  T
Q  227 accattctaaactcttggattgatctaaaggttgagacacaaaagggaagagaaaattacaggagaaataaaagtttgtattattcannnnnnnccttca 326  Q
    || ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||||||       ||||||    
T  9809448 acaattctaaactcttagattcatctaaaggttgagacacaagagggaagagaaaattagaggagagagaaaagtttgtattattcatttttttccttca 9809547  T
Q  327 attttcgcggactctctttctcaatcctctatcttcttcttcgacaggtccataggcaccataaccacaaataatcttagtcttcaaacaaaataacatg 426  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  9809548 attttcggggactctctttctcaatcctctatcttcttcttcaacaggtccataggcaccataaccacaaataatcttggtcttcaaacaaattaacatg 9809647  T
Q  427 attaaatgtttaaaatcattgagaagcagatcaagccttttccccttgacaatatt 482  Q
    | ||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  9809648 aataaatgtctaaaatcattgagaagcaaatcaagtcttttccccttgacaatatt 9809703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 129 - 482
Target Start/End: Original strand, 16248334 - 16248679
Alignment:
Q  129 gagtgatgataggtggacatacttaggtggcataccacatttgtaccgctcttaggaa-atgatcccctcgtgccttttaaaacaatgttgtgttt--tg 225  Q
    ||||| ||||||||  |||||||||||||||||||||| |||||||| | |||||| | ||||||||||  ||||||||||     |||||||| |  ||    
T  16248334 gagtggtgataggtaaacatacttaggtggcataccac-tttgtaccacccttagggatatgatcccctactgccttttaatgtcctgttgtgtgtcttg 16248432  T
Q  226 taccattctaaactcttggattgatctaaaggttgagacacaaaagggaagagaaaattacaggagaaataaaagtttgtattattcannnnnnnccttc 325  Q
    |   |||||  ||| |||||||||||||||||||||||| || | ||||||||||||||| |||||| | ||||||||||  ||||||       |||||    
T  16248433 tgaaattctggactgttggattgatctaaaggttgagacgcaga-gggaagagaaaattagaggagagagaaaagtttgtcctattcattttt--ccttc 16248529  T
Q  326 aattttcgcggactctctttctcaatcctctatcttcttcttcgacagg-tccataggcaccataac--cacaaataatcttagtcttcaaacaaaataa 422  Q
    |||||||| || || | |||||||||||||| ||||||||||| ||||| |||||||| |||||| |  |||| |||||||| |||||||||||||||      
T  16248530 aattttcgtgggctttatttctcaatcctctctcttcttcttcaacaggttccataggaaccatagccacacacataatcttggtcttcaaacaaaat-- 16248627  T
Q  423 catgattaaatgtttaaaatcattgagaagcagatcaagccttttccccttgacaatatt 482  Q
            ||||| | |||||||||||||||| |||||||||| | ||||||||||||||    
T  16248628 --------aatgtctgaaatcattgagaagcatatcaagccttcttcccttgacaatatt 16248679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 129 - 375
Target Start/End: Original strand, 45623117 - 45623362
Alignment:
Q  129 gagtgatgataggtggacatacttaggtggcataccacatttgtaccgctcttaggaa-atgatcccctcgtgccttttaaaacaatgttgt--gttttg 225  Q
    ||||| ||||||||  |||||||||||||||||||||| |||||||| | |||||| | ||||||| ||| ||| |||||| |  |||||||  || |||    
T  45623117 gagtggtgataggtatacatacttaggtggcataccac-tttgtaccacccttagggatatgatcctctcctgc-ttttaatatcatgttgtatgtcttg 45623214  T
Q  226 taccattctaaactcttggattgatctaaaggttgagacacaaaagggaagagaaaattacaggagaaataaaagtttgtattattcannnnnnnccttc 325  Q
    | | |||||| |   |||||||||||||||||||||||||| | ||||||||||||||||  ||||| | |||||| | |  ||||||       |||||    
T  45623215 tgcaattctagatctttggattgatctaaaggttgagacac-agagggaagagaaaattaggggagagagaaaagtctatcctattca-tattttccttc 45623312  T
Q  326 aattttcgcggactctctttctcaatcctctatcttcttcttcgacaggt 375  Q
    |||||| | || || |||||||||||||||| ||||||||||| ||||||    
T  45623313 aatttttgtgggctttctttctcaatcctctctcttcttcttcaacaggt 45623362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 39939059 - 39939252
Alignment:
Q  20 gaatgaccaatcttgtgtaccatgatcacatgtacactctactctccggtctataggtttattatagtttagcatgcatttatgagttttttgtttgtgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39939059 gaatgaccaatcttgtgtaccatgatcacatgtacactctactctccggtctataggtttattatagtttagcatgcatttatgagttttttgtttgtgg 39939158  T
Q  120 ataaaaaatgagtgatgataggtggacatacttaggtggcataccacatttgtaccgctcttaggaaatgatcccctcgtgccttttaaaacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  39939159 ataaaaaatgagtgatgataggtggacatacttaggtggcataccacctttgtaccactcttaggaaatgatcccctcgtgccttttaaaacaa 39939252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 264 - 482
Target Start/End: Complemental strand, 39940139 - 39939921
Alignment:
Q  264 cacaaaagggaagagaaaattacaggagaaataaaagtttgtattattcannnnnnnccttcaattttcgcggactctctttctcaatcctctatcttct 363  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  39940139 cacaagagggaagagaaaattagaggagagataaaagtttgtattattcatttttttccttcaattttcgcggactctctttctcaatcctctatcttct 39940040  T
Q  364 tcttcgacaggtccataggcaccataaccacaaataatcttagtcttcaaacaaaataacatgattaaatgtttaaaatcattgagaagcagatcaagcc 463  Q
    ||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39940039 tcttcaacagatccataggcaccataaccacaaataatattggtcttcaaacaaaataacatgaataaatgtttaaaatcattgagaagcagatcaagcc 39939940  T
Q  464 ttttccccttgacaatatt 482  Q
    |||||||||||||||||||    
T  39939939 ttttccccttgacaatatt 39939921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 27128956 - 27128904
Alignment:
Q  241 ttggattgatctaaaggttgagacacaaa-agggaagagaaaattacaggaga 292  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  27128956 ttggattgatctaaaggttgagacacaaagaggaaagagaaaattagaggaga 27128904  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 36325328 - 36325374
Alignment:
Q  129 gagtgatgataggtggacatacttaggtggcataccacatttgtacc 175  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  36325328 gagtgatgataggttgacatccttaggtggcataccacctttgtacc 36325374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 129 - 403
Target Start/End: Original strand, 34578464 - 34578740
Alignment:
Q  129 gagtgatgataggtggacatacttaggtggcataccacatttgtaccgctcttaggaa-atgatcccctcgtgccttttaaaacaatgttgt--gttttg 225  Q
    ||||| ||||||||  |||||||||||||||||||||| |||||||| | |||||| | ||||||||||| ||| |||||| |  |||||||  || |||    
T  34578464 gagtggtgataggtatacatacttaggtggcataccac-tttgtaccacccttagggatatgatcccctcctgc-ttttaatatcatgttgtatgtcttg 34578561  T
Q  226 taccattctaaactcttggattgatctaaaggttgagacacaaa-agggaagagaaaattacaggagaaataaaagtttgtattattcannnnnnncctt 324  Q
    | | |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| | |||||| | |  ||||||       ||||    
T  34578562 tgcaattctagactgttggattgatctaaaggttgagacacaaagagggaagagaaaattaagggagagagaaaagtctatcctattca-tattttcctt 34578660  T
Q  325 caattttcgcggactctctttctcaatcctctatcttcttcttcgacagg-tccataggcaccataaccacaaataatct 403  Q
    ||||||||| || || |||||||||||||||| ||||||||||| ||||| |||||||| || ||| |||||||||||||    
T  34578661 caattttcgtgggctttctttctcaatcctctctcttcttcttcaacaggttccataggaactatagccacaaataatct 34578740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 403
Target Start/End: Complemental strand, 7935117 - 7934943
Alignment:
Q  230 attctaaactcttggattgatctaaaggttgagacacaaa-agggaagagaaaattacaggagaaataaaagtttgtattattcannnnnnnccttcaat 328  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| | |||||| | |  ||| ||       ||||||||    
T  7935117 attctagactgttggattgatctaaaggttgagacacaaagagggaagagaaaattaggggagagagaaaagtctatcctatacatatttt-ccttcaat 7935019  T
Q  329 tttcgcggactctctttctcaatcctctatcttcttcttcgacagg-tccataggcaccataaccacaaataatct 403  Q
    ||||| || || |||||||||||||||| ||||||||||| ||||| |||||||| |||||| |||||||||||||    
T  7935018 tttcgtgggctttctttctcaatcctctctcttcttcttcaacaggttccataggaaccatatccacaaataatct 7934943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 52623679 - 52623568
Alignment:
Q  128 tgagtgatgataggtggacatacttaggtggcataccacatttgtaccgctcttaggaaatgatcccctcgtgccttttaaaacaatgttg--tgttttg 225  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||| |||    
T  52623679 tgagtgatgataggtggacatgcttaggtggcataccacctttgtaccactcttaggaaatgatcccctcttgccttttaaaacaatgttgtttgtcttg 52623580  T
Q  226 taccattctaaa 237  Q
    ||| ||||||||    
T  52623579 tacaattctaaa 52623568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 54725508 - 54725462
Alignment:
Q  129 gagtgatgataggtggacatacttaggtggcataccacatttgtacc 175  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  54725508 gagtgatgataggttgacatccttaggtggcataccacctttgtacc 54725462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 482
Target Start/End: Complemental strand, 31888994 - 31888649
Alignment:
Q  129 gagtgatgataggtggacatacttaggtggcataccacatttgtaccgctcttaggaa-atgatcccctcgtgccttttaaaacaatgttgtgttt--tg 225  Q
    ||||| ||||||||  |||||||||||||||||||||| |||||| | | |||||| | ||||||||||  ||||||||||     |||||||| |  ||    
T  31888994 gagtggtgataggtaaacatacttaggtggcataccac-tttgtaacacccttagggatatgatcccctactgccttttaatgtcctgttgtgtgtcttg 31888896  T
Q  226 taccattctaaactcttggattgatctaaaggttgagacacaaaagggaagagaaaattacaggagaaataaaagtttgtattattcannnnnnnccttc 325  Q
    |   |||||  ||| |||||||||||||||||||||||| || | ||||||||||||||| |||||| | ||||||||||  ||||||       |||||    
T  31888895 tgaaattctggactgttggattgatctaaaggttgagacgcaga-gggaagagaaaattagaggagagagaaaagtttgtcctattcattttt--ccttc 31888799  T
Q  326 aattttcgcggactctctttctcaatcctctatcttcttcttcgacagg-tccataggcaccataac--cacaaataatcttagtcttcaaacaaaataa 422  Q
    |||||| | || || | |||||||||||||| ||||||||||| ||||| |||||||| |||||| |  |||| |||||||| ||||||||| |||||      
T  31888798 aattttagtgggctttatttctcaatcctctctcttcttcttcaacaggttccataggaaccatagccacacacataatcttggtcttcaaaaaaaat-- 31888701  T
Q  423 catgattaaatgtttaaaatcattgagaagcagatcaagccttttccccttgacaatatt 482  Q
            ||||| | |||||||||||||||| |||||||||| | ||||||||||||||    
T  31888700 --------aatgtctgaaatcattgagaagcatatcaagccttcttcccttgacaatatt 31888649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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