View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_28 (Length: 477)
Name: NF2176_low_28
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 37546566 - 37547008
Alignment:
| Q |
14 |
aagaatatttagggaaaaaagtaaaggtattaacgaacatatttgtgggttatcaaagaggtatgttgctatcaaagtggatatagagaaaacctactat |
113 |
Q |
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| T |
37546566 |
aagaatatttagggaaaaaagtaaaggtattaaccaacatatttgtgggttatcaaagaggtatgttgctatcaaagtggatatagagaaaacctactat |
37546665 |
T |
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| Q |
114 |
gatcgagtaaggtgggttttctattagacacttagcatgaggctgagtttggtgataataggtgattatattgagattttgaaggcttgtatatctactt |
213 |
Q |
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| T |
37546666 |
gatcgagtaaggtgggttttctattagacactcagcatgaggctgagtttggtgaaaacct---actatattgagattttgaaggcttgtatatctactt |
37546762 |
T |
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| Q |
214 |
cccatatgagtttgctttttaatgcgtcaaaaataatatttcagcccttctcgcgggcggagtaaggcaatgatgtcccctatctctgtatctctttttt |
313 |
Q |
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| T |
37546763 |
cccatatgagtttgctttttaatgcgtcaaaaataatatttcagcccttctcgcgggcggagtaaggcaatgatgtcccctatctctgtatctctttttt |
37546862 |
T |
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| Q |
314 |
cgaatgatcaaatagaggttattatgtgatgcttaaatactcttgatctcnnnnnnntgttcacagcgggccttggagttgagtaggatgaatggtttcg |
413 |
Q |
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| T |
37546863 |
ccaatgatcaaatagaggttattatgtgatgcttaaatactcttgatctcaaaaaaatgttcacagcgggcctcggagttgagtaggatgaatggtttcg |
37546962 |
T |
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| Q |
414 |
gctaactcaagatttagggaaataactcagtgttccctgtttatat |
459 |
Q |
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| T |
37546963 |
gctaactcaagatttagggaaataactcagtgttccctgtttatat |
37547008 |
T |
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