View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_37 (Length: 419)

Name: NF2176_low_37
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_37
NF2176_low_37
[»] chr1 (10 HSPs)
chr1 (226-395)||(45922300-45922469)
chr1 (39-165)||(2259179-2259312)
chr1 (226-295)||(45923043-45923112)
chr1 (170-214)||(41884232-41884276)
chr1 (170-214)||(2687730-2687774)
chr1 (170-214)||(38931315-38931359)
chr1 (170-214)||(48835100-48835144)
chr1 (170-214)||(50950898-50950942)
chr1 (170-208)||(4641771-4641809)
chr1 (170-214)||(4640529-4640573)
[»] chr7 (13 HSPs)
chr7 (232-365)||(6730000-6730133)
chr7 (232-305)||(42607154-42607227)
chr7 (170-214)||(29060742-29060786)
chr7 (170-214)||(42607082-42607126)
chr7 (170-209)||(6730165-6730204)
chr7 (226-297)||(44541055-44541125)
chr7 (232-305)||(6729471-6729544)
chr7 (170-214)||(12732248-12732292)
chr7 (176-209)||(9122657-9122690)
chr7 (170-214)||(24995853-24995897)
chr7 (170-206)||(29060009-29060045)
chr7 (170-214)||(32871143-32871187)
chr7 (170-214)||(42607815-42607859)
[»] chr8 (7 HSPs)
chr8 (232-363)||(35943149-35943280)
chr8 (232-305)||(35943741-35943814)
chr8 (170-209)||(35943077-35943116)
chr8 (170-206)||(35840541-35840577)
chr8 (170-214)||(37562296-37562340)
chr8 (170-205)||(35839723-35839758)
chr8 (170-206)||(35943850-35943886)
[»] chr3 (8 HSPs)
chr3 (170-214)||(33455784-33455828)
chr3 (170-214)||(33968182-33968226)
chr3 (170-209)||(33454867-33454906)
chr3 (174-214)||(49161811-49161851)
chr3 (170-214)||(51421678-51421722)
chr3 (170-214)||(55124415-55124459)
chr3 (170-214)||(8652811-8652855)
chr3 (170-206)||(53714427-53714463)
[»] chr2 (4 HSPs)
chr2 (170-214)||(36390958-36391002)
chr2 (170-214)||(34617654-34617698)
chr2 (174-214)||(15602823-15602863)
chr2 (170-214)||(23876066-23876110)
[»] chr5 (6 HSPs)
chr5 (169-214)||(4789520-4789565)
chr5 (170-214)||(4820455-4820499)
chr5 (170-214)||(26712391-26712435)
chr5 (170-214)||(26982129-26982173)
chr5 (170-214)||(6803949-6803993)
chr5 (178-214)||(42651582-42651618)
[»] chr6 (2 HSPs)
chr6 (170-214)||(25371170-25371214)
chr6 (170-214)||(25067853-25067897)
[»] chr4 (6 HSPs)
chr4 (170-214)||(232052-232096)
chr4 (170-214)||(25970107-25970151)
chr4 (170-209)||(34155634-34155673)
chr4 (170-214)||(6680345-6680389)
chr4 (170-214)||(33370878-33370922)
chr4 (170-214)||(34154795-34154839)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 226 - 395
Target Start/End: Original strand, 45922300 - 45922469
Alignment:
Q  226 caaacaagaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactacaatcctctctctccggtctccatcatgcgta 325  Q
    ||||||||||||||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||    
T  45922300 caaacaagaaacacaatcttatcatggtctatcaacacttgattattttttcaatttgtcttccactacaattctctctctccagtctccagcatgcgta 45922399  T
Q  326 aatcaaccaccaacaacatcaaacataaaataaaatccttataatattttctgaacacgaatggtttacc 395  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  45922400 aaccaaccaccaacaacatcaaacataaaataaaatccttataatgttttttgaacacgaatggtttacc 45922469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 2259179 - 2259312
Alignment:
Q  39 tgtaattatgaagtttagaatca--gaaaaatttataagttgcctttttgcttctcatgtgggtattgcttcttg-----tttgaagttttcctcttgtt 131  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||     ||||||||||||||||||||    
T  2259179 tgtaattatgaagtttagaatcacagaaaaatttataagttgcctttttacttctcatgtgggtattgcttcttgtttaatttgaagttttcctcttgtt 2259278  T
Q  132 gannnnnnnacagctaaatcatagttgaagttcc 165  Q
    ||       |||||||||||||||||||||||||    
T  2259279 gatttttttacagctaaatcatagttgaagttcc 2259312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 45923112 - 45923043
Alignment:
Q  226 caaacaagaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactaca 295  Q
    ||||||||||||||||| ||||||||||||||||||| || ||| ||||||  |||| ||||||||||||    
T  45923112 caaacaagaaacacaatcttatcatggtctatcaacacttgattatttttttgctttatcttccactaca 45923043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 41884276 - 41884232
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||    
T  41884276 gtggggtttagcatggaaaagggaaattgtttcccaccataggaa 41884232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 2687774 - 2687730
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  2687774 gtggggtttagcatgggaaaggataattgtttcccaccatgggaa 2687730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 38931315 - 38931359
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||    
T  38931315 gtggggtttagcatgagaaaggggaattgtttcccaccatgggaa 38931359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 48835144 - 48835100
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||    
T  48835144 gtggggtttagcatgggaaaggggaattgttttccaccatgggaa 48835100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 50950942 - 50950898
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||    
T  50950942 gtggggtttagcatgggaatgggaagttgtttcccaccataggaa 50950898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 4641809 - 4641771
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccacca 208  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  4641809 gtggagtttagcatgggaaaggggaattgtttcccacca 4641771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 4640529 - 4640573
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||| ||||||||||| |||||| |||||||||||||||| ||||    
T  4640529 gtggagtttagcatggtaaaggggaattgtttcccaccatgggaa 4640573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 365
Target Start/End: Complemental strand, 6730133 - 6730000
Alignment:
Q  232 agaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactacaatcctctctctccggtctccatcatgcgtaaatcaa 331  Q
    ||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||||| |||| |||  |||||||||  ||||||| ||| | | |||||     
T  6730133 agaaacacaatcttatcatggtctataaacatttgattattttttcactttgtctttcactccaactctctctctctagtctccagcatacctcaatcac 6730034  T
Q  332 ccaccaacaacatcaaacataaaataaaatcctt 365  Q
    |||||||||||||||| |||||||||||||||||    
T  6730033 ccaccaacaacatcaagcataaaataaaatcctt 6730000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 42607154 - 42607227
Alignment:
Q  232 agaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactacaatcctctctc 305  Q
    ||||||||||| |||||||| |||||||||| || ||| |||||||||||| ||||||||||| || |||||||    
T  42607154 agaaacacaatcttatcatgatctatcaacacttgattattttttcactttatcttccactaccattctctctc 42607227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 29060786 - 29060742
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  29060786 gtggggtttagcatgggaaaggggaattgtttcccaccatgggaa 29060742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 42607082 - 42607126
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  42607082 gtggggtttagcatgggaaaggggaattgtttcccaccatgggaa 42607126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 6730204 - 6730165
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccat 209  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6730204 gtggggtttagcatgggaaagggaagttgtttcccaccat 6730165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 44541055 - 44541125
Alignment:
Q  226 caaacaagaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactacaat 297  Q
    |||| |||||||||||| ||||||||| ||||||||| || |||  ||||||||||| ||||||||||||||    
T  44541055 caaataagaaacacaatcttatcatggcctatcaacacttaatt-atttttcactttatcttccactacaat 44541125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 6729471 - 6729544
Alignment:
Q  232 agaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactacaatcctctctc 305  Q
    ||||||||||| |||||||||| |||||||| || ||| |||||| ||||| |||| || |||||| |||||||    
T  6729471 agaaacacaatcttatcatggtttatcaacacttaattatttttttactttatctttcagtacaattctctctc 6729544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 12732248 - 12732292
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||    
T  12732248 gtggggtttagcatgggaaagggaaagagtttcccaccatgggaa 12732292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 9122657 - 9122690
Alignment:
Q  176 tttagcatgggaaagggaaattgtttcccaccat 209  Q
    ||||||||||||||||||| ||||||||||||||    
T  9122657 tttagcatgggaaagggaagttgtttcccaccat 9122690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 24995853 - 24995897
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||| ||||||||||| | |||||||||||||| ||||    
T  24995853 gtggggtttagaatgggaaaggggagttgtttcccaccatgggaa 24995897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 29060009 - 29060045
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccac 206  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  29060009 gtggggtttagcatgggaaaggaaaattgttttccac 29060045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 32871187 - 32871143
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||||    
T  32871187 gtggggtttagcatgggaatggggagttgtttcccaccataggaa 32871143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 42607859 - 42607815
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||||||||||||||| |||||| |||||||||||| ||| ||||    
T  42607859 gtggggtttagcatggaaaaggggaattgtttcccatcataggaa 42607815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 363
Target Start/End: Original strand, 35943149 - 35943280
Alignment:
Q  232 agaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactacaatcctctctctccggtctccatcatgcgtaaatcaa 331  Q
    ||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||| |||| |||  |||||||||  ||||||| ||| | | |||||     
T  35943149 agaaacacaatcttatcatggtctatcaacacttgattattttttcactttgtctttcactccaactctctctctctagtctccagcatacctcaatcac 35943248  T
Q  332 ccaccaacaacatcaaacataaaataaaatcc 363  Q
    |||||||||||||||| |||||||||||||||    
T  35943249 ccaccaacaacatcaagcataaaataaaatcc 35943280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 35943814 - 35943741
Alignment:
Q  232 agaaacacaattttatcatggtctatcaacattttattgttttttcactttgtcttccactacaatcctctctc 305  Q
    ||||||||||| |||||||||| |||||||| || ||| |||||| ||||| |||| ||||||||| |||||||    
T  35943814 agaaacacaatcttatcatggtttatcaacacttaattatttttttactttatctttcactacaattctctctc 35943741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 35943077 - 35943116
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccat 209  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  35943077 gtggggtttagcatgggaaagggaagttgtttcccaccat 35943116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 35840577 - 35840541
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccac 206  Q
    ||||||||||||||||||||||||| |||||||||||    
T  35840577 gtggggtttagcatgggaaagggaagttgtttcccac 35840541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 37562296 - 37562340
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  37562296 gtggggtttagcatgggaaaggagaattgtttcccaccataggaa 37562340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 35839723 - 35839758
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttccca 205  Q
    ||||||||||||||||||||||||| ||||||||||    
T  35839723 gtggggtttagcatgggaaagggaagttgtttccca 35839758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 35943886 - 35943850
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccac 206  Q
    ||||||||||||||||||||||  |||||||||||||    
T  35943886 gtggggtttagcatgggaaaggagaattgtttcccac 35943850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 33455828 - 33455784
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  33455828 gtggggtttagcatgggaaaggggaattgtttcccaccataggaa 33455784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 33968182 - 33968226
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||    
T  33968182 gtggggtttagcatgggaaagggaacttgtttcccaccatgggaa 33968226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 33454867 - 33454906
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccat 209  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  33454867 gtggggtttagcatgggaaaggaaaattgtttcccaccat 33454906  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 49161851 - 49161811
Alignment:
Q  174 ggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  49161851 ggtttagcatgggaaaggggaattgtttcccaccatgggaa 49161811  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 51421722 - 51421678
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||    
T  51421722 gtggggtttagcatgagaaaggggaattgtttcccaccatgggaa 51421678  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 55124415 - 55124459
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||    
T  55124415 gtggggtttagcatgggaaagggaaagagtttcccaccatgggaa 55124459  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 8652811 - 8652855
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||| ||| | |||||||||| ||||    
T  8652811 gtggggtttagcatgggaaaggggaatcggttcccaccatgggaa 8652855  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 53714463 - 53714427
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccac 206  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  53714463 gtggagtttagcatgggaaagggaaattctttcccac 53714427  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 36390958 - 36391002
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||    
T  36390958 gtggggtttagcatgggaaagggaagttgtttcccaccatgggaa 36391002  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 34617654 - 34617698
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  34617654 gtggggtttagcatgggaaaggataattgtttcccaccatgggaa 34617698  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 15602863 - 15602823
Alignment:
Q  174 ggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||||||||| |||||||||| |||||||||||||| ||||    
T  15602863 ggtttagcataggaaagggaagttgtttcccaccatgggaa 15602823  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 23876110 - 23876066
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||||||||||||||||||| || | |||||||||||||| ||||    
T  23876110 gtggggtttagcatgggaaatgggagttgtttcccaccatgggaa 23876066  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 4789520 - 4789565
Alignment:
Q  169 tgtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||    
T  4789520 tgtggggtttagcatgggaaaggggagttgtttcccaccatgggaa 4789565  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 4820455 - 4820499
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||    
T  4820455 gtggggtttaacatgggaaagggaaattgttttccaccatgggaa 4820499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 26712435 - 26712391
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||    
T  26712435 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaa 26712391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 26982173 - 26982129
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||    
T  26982173 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaa 26982129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 6803949 - 6803993
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||| ||||||||||||| |||||||| ||||| ||||    
T  6803949 gtggggtttagtatgggaaagggaagttgtttcctaccataggaa 6803993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 42651618 - 42651582
Alignment:
Q  178 tagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  42651618 tagcatgggaaagggaagttgtttcccaccataggaa 42651582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 25371170 - 25371214
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||    
T  25371170 gtggggtttagcatgggaaagtgaacttgtttcccaccatgggaa 25371214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 25067897 - 25067853
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||  | |||||||||||||| ||||    
T  25067897 gtggggtttagcatgggaaaggatatttgtttcccaccataggaa 25067853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 232096 - 232052
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||    
T  232096 gtggggtttagtatgggaaagggaagttgtttcccaccatgggaa 232052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 25970107 - 25970151
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||    
T  25970107 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaa 25970151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 34155673 - 34155634
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccat 209  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  34155673 gtggggtttagcatgggaaagggaacttgttttccaccat 34155634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 6680389 - 6680345
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||||||  ||||| |||||| ||||    
T  6680389 gtggggtttagcatgggaaagggaaagagtttctcaccatgggaa 6680345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 33370922 - 33370878
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    ||||||||||||||||||||||  | |||||||||||||| ||||    
T  33370922 gtggggtttagcatgggaaaggatacttgtttcccaccatgggaa 33370878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 34154795 - 34154839
Alignment:
Q  170 gtggggtttagcatgggaaagggaaattgtttcccaccatcggaa 214  Q
    |||||||||||||||||||| | || |||||||||||||| ||||    
T  34154795 gtggggtttagcatgggaaaagaaacttgtttcccaccatgggaa 34154839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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