View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_low_38 (Length: 418)
Name: NF2176_low_38
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 10487846 - 10487597
Alignment:
| Q |
2 |
tcgtattattttgttaccttaattcctaaggcggattcccctcttcagttgggtgacttcaatatgctctct--tcctaaatcactctataagctggtgg |
99 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
10487846 |
tcgtcttattttgttaccttaattcctaatgcggattcccctcttcagttgggtgacttcaatctgctctctcttcctaaatcactctataagctggtgg |
10487747 |
T |
|
| Q |
100 |
caaaggttttcgtgggtatgttagcgcgagtcatggataaaatcattttatttaagaatcgaaatggatctctactctaacaacttttgataacatttca |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10487746 |
caaaggttttcgtgggtaggttagcgcgagtcatggataaaatcattttatttaagaatcgaaatggatctctactctaacaacttttgataacatttca |
10487647 |
T |
|
| Q |
200 |
aatcatacataaaaataaatagcaaggatactatcatcatcaagtaaaac |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
10487646 |
aatcatacataaacataaatagcaaggataatatcaacattaagtaaaac |
10487597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 41100896 - 41101016
Alignment:
| Q |
288 |
cactacaagaaatgaaagtaattccgaccaaaaaattctgaggaaccattgtttctcgct-aaatagaggtaattccgagcaacttttttctcggtacac |
386 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| | | |||||| || ||||| || | ||||||| ||| ||| ||||||| | |
|
|
| T |
41100896 |
cactacaagaaatgaaggtaattccgaccaaaaaatttcgaggaaacttgatttctcactaaaataaagat-tttccgaggaacaatttcctcggtatgc |
41100994 |
T |
|
| Q |
387 |
acatgtcaggaatctctgctcc |
408 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
41100995 |
acgtgtcaggaatctctgctcc |
41101016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 288 - 412
Target Start/End: Complemental strand, 21926753 - 21926629
Alignment:
| Q |
288 |
cactacaagaaatgaaagtaattccgaccaaaaaattctgaggaaccattgtttctcgctaaatagaggtaattccgagcaacttttttctcggtacaca |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21926753 |
cactacaagaaatgaaagtaattccgaccaaaaaattccgaggaaccattgtttctcgctaaatagaggtaattccgagcaactttttcctcggtacaca |
21926654 |
T |
|
| Q |
388 |
catgtcaggaatctctgctcctcct |
412 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
21926653 |
catgtcaggaatctctgctgctcct |
21926629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 26970866 - 26970803
Alignment:
| Q |
287 |
tcactacaagaaatgaaagtaattccgaccaaaaaattctgaggaaccattgtttctcgctaaa |
350 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||| | |||||||| |||||| |
|
|
| T |
26970866 |
tcactacaagaaatgaaggtaattccgaccaacaaatttcgaggaaactttgtttcttgctaaa |
26970803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 33239990 - 33239879
Alignment:
| Q |
291 |
tacaagaaatgaaagtaattccgaccaaaaaattctgaggaaccattgtttctcgct-aaatagaggtaattccgagcaacttttttctcggtacacaca |
389 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| |||||| | |||||||||| ||||| |||| ||||||| |||| ||| ||||||| | | |
|
|
| T |
33239990 |
tacaagaattgaaagtaattacaaccaaaaaattccgaggaaatttggtttctcgctaaaataaaggt-tttccgaggaactatttcctcggtatgctcg |
33239892 |
T |
|
| Q |
390 |
tgtcaggaatctc |
402 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33239891 |
tgtcaggaatctc |
33239879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University