View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_low_39 (Length: 414)
Name: NF2176_low_39
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 48674287 - 48674177
Alignment:
| Q |
23 |
tagcagttaggttcatgattggtttctctttggcaactttggattcttgccaatattagatgagtactacgtttaataggaagattgttggacttgttaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||| || |||||||||||||||| ||||||||||||| |
|
|
| T |
48674287 |
tagcagttaggttcatgattggtttctctttggcaacttttgtttcttaccaatattggatgag---tatgtttaataggaagattattggacttgttaa |
48674191 |
T |
|
| Q |
123 |
tgggactgcagctg |
136 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
48674190 |
tgggactgctgctg |
48674177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 48674114 - 48674057
Alignment:
| Q |
159 |
ctagaagactcttcctcattttttagttaggccttagttttctacttcacattctgat |
216 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||| |||||||| |||||| |||||||| |
|
|
| T |
48674114 |
ctagaagactcttccccatctttttgttaggccgtagttttccacttcatattctgat |
48674057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 21371695 - 21371808
Alignment:
| Q |
23 |
tagcagttaggttcatgattggtttctctttggcaactttggattcttgccaatattagatgagtactacgtttaataggaagattgttggacttgttaa |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || | ||| || ||||||| ||||||||||| ||||||||| || ||| ||||||||| ||| |
|
|
| T |
21371695 |
tagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaa |
21371794 |
T |
|
| Q |
123 |
tgggactgcagctg |
136 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
21371795 |
tggtactgctgctg |
21371808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 21385862 - 21385749
Alignment:
| Q |
23 |
tagcagttaggttcatgattggtttctctttggcaactttggattcttgccaatattagatgagtactacgtttaataggaagattgttggacttgttaa |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || | ||| || ||||||| ||||||||||| ||||||||| || ||| ||||||||| ||| |
|
|
| T |
21385862 |
tagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaa |
21385763 |
T |
|
| Q |
123 |
tgggactgcagctg |
136 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
21385762 |
tggtactgctgctg |
21385749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 36199891 - 36199991
Alignment:
| Q |
27 |
agttaggttcatgattggtttctctttggcaactttggattcttgccaatattagatgagtactacgtttaata-ggaagattgttggacttgttaatgg |
125 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| | ||||||||||||| || ||||| |||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
36199891 |
agttaggttcatgattggtttgtctttagcaacttttgtttcttgccaatatcggacgagtaagacgtttaatagggaagactgtgggacttgttaatgg |
36199990 |
T |
|
| Q |
126 |
g |
126 |
Q |
| |
|
| |
|
|
| T |
36199991 |
g |
36199991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 691253 - 691178
Alignment:
| Q |
227 |
tttgtcaagtacaattttgtagattttagatacaaggtgcaattcacattgtgacaaggagctaaaagtaattgaa |
302 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| ||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
691253 |
tttgtcaagtacatttttgtagattttggatacaaggtgaaattcaccctctgacaaggagccaaaagtaattgaa |
691178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 693269 - 693226
Alignment:
| Q |
93 |
gtttaataggaagattgttggacttgttaatgggactgcagctg |
136 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
693269 |
gtttaataggaggattgttggacttgttaatgggactgctgctg |
693226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 693213 - 693110
Alignment:
| Q |
110 |
ttggacttgttaatgggactgcagctgctgatttttagtccnnnnnnngctagaagactcttcctcat-tttttagttaggccttagttttctacttcac |
208 |
Q |
| |
|
||||||||| |||| |||||||||||||||| | |||| | |||||||||||||||| ||| |||||||||||||| || ||||||||| ||| |
|
|
| T |
693213 |
ttggacttgataataagactgcagctgctgatatctagtgctttttttgctagaagactcttccacatctttttagttaggccataattttctactgcac |
693114 |
T |
|
| Q |
209 |
attc |
212 |
Q |
| |
|
|||| |
|
|
| T |
693113 |
attc |
693110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 691370 - 691315
Alignment:
| Q |
161 |
agaagactcttcctcattttttagttaggccttagttttctacttcacattctgat |
216 |
Q |
| |
|
||||| |||||||| || |||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
691370 |
agaagtctcttccttatctttttgttaggccgtaattttctacttcacattctgat |
691315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University