View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_43 (Length: 395)
Name: NF2176_low_43
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 40 - 395
Target Start/End: Original strand, 50127734 - 50128086
Alignment:
| Q |
40 |
gaaattactttccaatgacaacagaaaatgttgtgtttcaaaaaccatcatnnnnnnntactaatagttttcagacttaaatgcgactaaatagttgtta |
139 |
Q |
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| T |
50127734 |
gaaattacttcccaatgacaacagaaaatgttgtgtttcaaaaaccatcataaaaaa-tactaatagttttcagacttaaatgcgactaaatagttgtta |
50127832 |
T |
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| Q |
140 |
ggtagatcccttagtaagttgaaataattgttaggtgtcacatgtctattggtactaaattactgctagaagaggagttagttgaaggctgggaatagct |
239 |
Q |
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| T |
50127833 |
ggtagatcccttagtaagttgaaataattgttaggtgtcacatgtctattggtactaaattactgctagaagaggagttagttgaaggctgggattagct |
50127932 |
T |
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| Q |
240 |
agagaaataaagcacattgcatacaaattgaagtgcgtgagagggatattgttttcttatgagagaaattggacctttgactagggaggtgcagaccctc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50127933 |
agagaaataaagcacattgcatacaaattgaagtgcgtgagagggata--gttttcttatgagagaaattgggcctttgactagggaggtgcagaccctc |
50128030 |
T |
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| Q |
340 |
aaatttttgcaacatttctataacaagagaatttacccctgcatcttggaagaaga |
395 |
Q |
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| T |
50128031 |
aaatttttgcaacatttctataactagagaatttacccctgcatcttggaagaaga |
50128086 |
T |
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