View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_44 (Length: 395)

Name: NF2176_low_44
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_44
NF2176_low_44
[»] chr1 (1 HSPs)
chr1 (93-325)||(26925678-26925906)
[»] chr7 (5 HSPs)
chr7 (147-325)||(35542912-35543087)
chr7 (40-127)||(38129891-38129978)
chr7 (68-122)||(35543090-35543144)
chr7 (40-87)||(9417912-9417959)
chr7 (265-313)||(9417442-9417490)
[»] chr6 (5 HSPs)
chr6 (42-111)||(21540429-21540498)
chr6 (268-325)||(22881141-22881198)
chr6 (268-325)||(22899076-22899133)
chr6 (35-98)||(22880844-22880903)
chr6 (35-98)||(22898779-22898838)
[»] chr4 (2 HSPs)
chr4 (268-325)||(23187103-23187160)
chr4 (67-116)||(23186934-23186983)
[»] chr3 (3 HSPs)
chr3 (40-90)||(25704569-25704619)
chr3 (61-122)||(5118986-5119047)
chr3 (36-73)||(5119063-5119100)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 93 - 325
Target Start/End: Original strand, 26925678 - 26925906
Alignment:
Q  93 taaatagtcacattctaaatacaactcaatatgtattccctcctcaatttacgatattccctcctcaattgttacatttt----ttccctccactattcc 188  Q
    |||||||||||||| ||||||||||| ||  |||| ||||||||||||||||| ||||||||||||||||||||||||||    ||||||||||||||||    
T  26925678 taaatagtcacattttaaatacaactgaacgtgtactccctcctcaatttacggtattccctcctcaattgttacattttttttttccctccactattcc 26925777  T
Q  189 ctccttctgcgttacattttttctcatggatatggcaagtactcgaaactcagtcaattgttctcatgtggcaggctggcagctataccacaataagtaa 288  Q
    |||||| || |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||        ||||||||||| |||| |||||||    
T  26925778 ctccttttgggttacattttttctcatggatatggcaagtgctcaaaactcaatcaattgttctcatg--------tggcagctatagcacagtaagtaa 26925869  T
Q  289 tataattatcttctttcaattttttcacctttttctc 325  Q
    ||||||||  || ||||||||||||||| ||||||||    
T  26925870 tataattaatttatttcaattttttcacatttttctc 26925906  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 147 - 325
Target Start/End: Complemental strand, 35543087 - 35542912
Alignment:
Q  147 tattccctcctcaattgttacattttt-tccctccactattccctccttctgcgttacattttttctcatggatatggcaagtactcgaaactcagtcaa 245  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||    
T  35543087 tattccctcctcaattgttacatttttctccctccactattccctccttctgcgttacattttttctcatggatatggcaagtgctcagaactcaatcaa 35542988  T
Q  246 ttgttctcatgtggcaggctggcagctataccacaataagta----atataattatcttctttcaattttttcacctttttctc 325  Q
    || ||||||||||        ||||||||| |||| ||||||    |||||||||  |||||||||||||||| ||||||||||    
T  35542987 tttttctcatgtg--------gcagctatagcacagtaagtaatatatataattactttctttcaattttttctcctttttctc 35542912  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 38129978 - 38129891
Alignment:
Q  40 cctccatctctctccactattaaccactctatttattgtattttgtgaaaaattaaatagtcacattctaaatacaactcaatatgta 127  Q
    ||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||| |||  ||||||||| |||||||| ||||    
T  38129978 cctccatctctctcccctattaaccattatatttattgtattttatgaaaaattaaataatcatcttctaaataaaactcaatgtgta 38129891  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 35543144 - 35543090
Alignment:
Q  68 ctatttattgtattttgtgaaaaattaaatagtcacattctaaatacaactcaat 122  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35543144 ctatttattgtattttgtgaaaaactaaatagtcacattctaaatacaactcaat 35543090  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 9417959 - 9417912
Alignment:
Q  40 cctccatctctctccactattaaccactctatttattgtattttgtga 87  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  9417959 cctccatctctctcccctattaaccaatctatttattgtattttgtga 9417912  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 9417490 - 9417442
Alignment:
Q  265 tggcagctataccacaataagtaatataattatcttctttcaatttttt 313  Q
    |||||||||||||||||||||| || ||||||| ||||||||| |||||    
T  9417490 tggcagctataccacaataagttatgtaattattttctttcaaattttt 9417442  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 21540498 - 21540429
Alignment:
Q  42 tccatctctctccactattaaccactctatttattgtattttgtgaaaaattaaatagtcacattctaaa 111  Q
    |||||||||||  | |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  21540498 tccatctctctgaagtattaaccactctattcattgtattttgtgaaaaactaaatagtcatattctaaa 21540429  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 22881141 - 22881198
Alignment:
Q  268 cagctataccacaataagtaatataattatcttctttcaattttttcacctttttctc 325  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||    
T  22881141 cagctataccacaataagttatataattaccctctttcaattttttcacgtttttctc 22881198  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 22899076 - 22899133
Alignment:
Q  268 cagctataccacaataagtaatataattatcttctttcaattttttcacctttttctc 325  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||    
T  22899076 cagctataccacaataagttatataattaccctctttcaattttttcacgtttttctc 22899133  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 22880844 - 22880903
Alignment:
Q  35 attttcctccatctctctccactattaaccactctatttattgtattttgtgaaaaattaaata 98  Q
    |||| ||||||||||||||| |||    ||||||||||||||||||||| ||||||| ||||||    
T  22880844 atttccctccatctctctcctcta----ccactctatttattgtattttttgaaaaactaaata 22880903  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 22898779 - 22898838
Alignment:
Q  35 attttcctccatctctctccactattaaccactctatttattgtattttgtgaaaaattaaata 98  Q
    |||| ||||||||||||||| |||    ||||||||||||||||||||| ||||||| ||||||    
T  22898779 atttccctccatctctctcctcta----ccactctatttattgtattttttgaaaaactaaata 22898838  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 23187103 - 23187160
Alignment:
Q  268 cagctataccacaataagtaatataattatcttctttcaattttttcacctttttctc 325  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||    
T  23187103 cagctataccacaataagttatataattaccctctttcaattttttcacgtttttctc 23187160  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 23186934 - 23186983
Alignment:
Q  67 tctatttattgtattttgtgaaaaattaaatagtcacattctaaatacaa 116  Q
    |||||||| |||||||||||||||| ||||||||||  ||||||||||||    
T  23186934 tctatttactgtattttgtgaaaaactaaatagtcatcttctaaatacaa 23186983  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 25704569 - 25704619
Alignment:
Q  40 cctccatctctctccactattaaccactctatttattgtattttgtgaaaa 90  Q
    |||||||||||| || |||||||| |||||||||||| |||||||||||||    
T  25704569 cctccatctctcacctctattaactactctatttattatattttgtgaaaa 25704619  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 5119047 - 5118986
Alignment:
Q  61 aaccactctatttattgtattttgtgaaaaattaaatagtcacattctaaatacaactcaat 122  Q
    |||||||||||| ||||| |||||||||||| |||||| |||  |||||||||||| |||||    
T  5119047 aaccactctattgattgttttttgtgaaaaactaaataatcatcttctaaatacaattcaat 5118986  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 5119100 - 5119063
Alignment:
Q  36 ttttcctccatctctctccactattaaccactctattt 73  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  5119100 ttttcctccatctctctcccctattaaccactctattt 5119063  T

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