View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_low_47 (Length: 393)
Name: NF2176_low_47
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 35 - 385
Target Start/End: Original strand, 30774161 - 30774511
Alignment:
| Q |
35 |
acaatagcaggacaacacttaacaacctaactgctgaaaaagaaaactatccagtctttacttcaaggtcttccaacatattttcaagcttcttcatatg |
134 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30774161 |
acaaaagcaagacaacacttatcaacctaactgctgaaaaagaaaactattcagtctttacttcaaggtctttcaacatattttcaagcttcttcatatg |
30774260 |
T |
|
| Q |
135 |
atcttcgagaacattactttcattccgctgattattcttatcaagcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgat |
234 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30774261 |
atcttcgagaacatgaatttcattccgctgattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgat |
30774360 |
T |
|
| Q |
235 |
agctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatat |
334 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| || || |
|
|
| T |
30774361 |
agctttaaatttacgtccttaatctttagaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcat |
30774460 |
T |
|
| Q |
335 |
cttcagcccagtactctctagcttcttgaatcatttttataatttcttctc |
385 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30774461 |
cttcagcacggtactctctagcttcttgaatcattttgttaatttcttctc |
30774511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 380
Target Start/End: Original strand, 8615635 - 8615969
Alignment:
| Q |
47 |
caacacttaacaacctaactgctgaaaaagaaaactatcc-agtctttacttcaaggtcttccaacatattttcaagcttcttcatatgatcttcgagaa |
145 |
Q |
| |
|
|||||||||| || |||| ||||||||||| |||||| | |||||| | | ||||||||||||||||| ||| |||| ||||| |||||||||||||| |
|
|
| T |
8615635 |
caacacttaaaaaactaattgctgaaaaaggaaactagcttagtcttaaatacaaggtcttccaacatacttttgagctccttcagatgatcttcgagaa |
8615734 |
T |
|
| Q |
146 |
cat-tactttcattccgctgattattcttatcaagcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaat |
244 |
Q |
| |
|
| | ||||| || || |||| |||||| |||||||||||||||||||||| | |||||||| ||||| |||| | |||||||||||||||||||||| |
|
|
| T |
8615735 |
cttctactt-cactctgctggttattcctatcaagcaaatttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaag |
8615833 |
T |
|
| Q |
245 |
ttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagccca |
344 |
Q |
| |
|
|| ||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| | | |||||||| |||| | ||||||||| | |
|
|
| T |
8615834 |
caacatccttattctttagagcattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcg |
8615933 |
T |
|
| Q |
345 |
gtact-ctctagcttcttgaatcatttttataatttc |
380 |
Q |
| |
|
||||| |||| ||||||||||||| |||| ||||||| |
|
|
| T |
8615934 |
gtactcctct-gcttcttgaatcagttttttaatttc |
8615969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 40 - 327
Target Start/End: Complemental strand, 8586960 - 8586673
Alignment:
| Q |
40 |
agcaggacaacacttaacaacctaactgctgaaaaagaaaactatccagtctttacttcaaggtcttccaacatattttcaagcttcttcatatgatctt |
139 |
Q |
| |
|
|||| ||||||| |||| || |||||| || ||||||||||| ||| |||| || ||||||||||||||| | ||||||| ||||| |||||| |
|
|
| T |
8586960 |
agcaagacaacatttaaaaatctaacttcttggaaagaaaactagccactcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatcca |
8586861 |
T |
|
| Q |
140 |
cgagaacattactttcattccgctgattattcttatcaagcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctt |
239 |
Q |
| |
|
| ||||||| | |||||| ||| |||||||||||||||||||||||||||| || |||||||| |||||||||||| | ||||||||| || ||| |
|
|
| T |
8586860 |
caagaacatctatgtcattctcctggttattcttatcaagcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactt |
8586761 |
T |
|
| Q |
240 |
taaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaatgcattcattaccatagacttccttaagaat |
327 |
Q |
| |
|
|| || | ||| || |||||||||||||||| ||| |||||| || ||||||||| |||||||||| ||| |||||||| |||| |
|
|
| T |
8586760 |
tagtttaatatccttattctttagagcattccttaacttgtaaacacaatcatctaatgaattcattaccttagccttccttaggaat |
8586673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 74 - 372
Target Start/End: Complemental strand, 16663215 - 16662917
Alignment:
| Q |
74 |
aagaaaactatccagtctttacttcaaggtcttccaacatattttcaagcttcttcatatgatcttcgagaacat-tactttcattccgctgattattct |
172 |
Q |
| |
|
|||||||||| ||||||| | | |||||| ||||||||| | ||||||| ||||| |||||| || ||||||| ||||| |||||| ||| || |||| |
|
|
| T |
16663215 |
aagaaaactagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctactt-cattcccctggttcttct |
16663117 |
T |
|
| Q |
173 |
tatcaagcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcattcct |
272 |
Q |
| |
|
|| |||||||| | ||||||| | |||||||| |||||||||||| |||||| | || |||||||| || || | | || |||||||||||||||| |
|
|
| T |
16663116 |
catgaagcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcct |
16663017 |
T |
|
| Q |
273 |
caacctgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcattttt |
372 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| | | |||||||| |||| || ||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
16663016 |
caatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttt |
16662917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 380
Target Start/End: Original strand, 15594081 - 15594292
Alignment:
| Q |
169 |
ttcttatcaagcaaatttgtagccactgcaattgcatcattgatctttttgagtttttgagatgatagctttaaatttacgtccataatctttagagcat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| | | || || ||| || || ||||| || || ||| || |||| ||||||| |
|
|
| T |
15594081 |
ttcttatcaagcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcat |
15594180 |
T |
|
| Q |
269 |
tcctcaacctgtaaatgcagccatctaatgcattcattaccatagacttccttaagaatatcatatcttcagcccagtactctctagcttcttgaatcat |
368 |
Q |
| |
|
| |||||| |||||| ||| |||||||||||||||||||| | |||||||| |||| || ||||||||| | || || |||||||||||||| |
|
|
| T |
15594181 |
ttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcat |
15594280 |
T |
|
| Q |
369 |
ttttataatttc |
380 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
15594281 |
ttttttaatttc |
15594292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 4679679 - 4679628
Alignment:
| Q |
166 |
ttattcttatcaagcaaatttgtagccactgcaattgcatcattgatctttt |
217 |
Q |
| |
|
||||||||||||||||| || || ||||||| ||||||||| |||||||||| |
|
|
| T |
4679679 |
ttattcttatcaagcaagttggtggccactgtaattgcatcgttgatctttt |
4679628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 28219049 - 28219097
Alignment:
| Q |
257 |
tctttagagcattcctcaacctgtaaatgcagccatctaatgcattcat |
305 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
28219049 |
tctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcat |
28219097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 43743915 - 43743998
Alignment:
| Q |
225 |
ttgagatgatagctttaaatttacgtccataatctttagagcattcctcaacctgtaaatgcagccatctaatgcattcattac |
308 |
Q |
| |
|
|||||| || |||||||| || || ||| || |||||| ||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
43743915 |
ttgagaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattac |
43743998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University