View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_50 (Length: 383)

Name: NF2176_low_50
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_50
NF2176_low_50
[»] chr4 (6 HSPs)
chr4 (30-202)||(23695999-23696171)
chr4 (254-383)||(23696211-23696340)
chr4 (277-381)||(23694068-23694171)
chr4 (60-161)||(56368644-56368745)
chr4 (60-161)||(56369003-56369104)
chr4 (60-108)||(1733467-1733515)
[»] chr5 (1 HSPs)
chr5 (60-182)||(26598057-26598178)
[»] chr2 (2 HSPs)
chr2 (59-107)||(15248336-15248384)
chr2 (59-183)||(29945065-29945187)
[»] chr7 (1 HSPs)
chr7 (59-107)||(9940621-9940669)
[»] chr3 (2 HSPs)
chr3 (123-179)||(36679397-36679453)
chr3 (123-179)||(36693012-36693068)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 23695999 - 23696171
Alignment:
Q  30 gattttcagtttgaatttgaacacccttactaaatacacattcagtagttatctacctgatgtatgtttgacaaaaaactgtatttctgataaataacta 129  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  23695999 gattttcggtttggatttgaacacccctactaaatacacattcagtagttatctaccagatgtatgtttgacaaaaaaccgtatttctgataaataacta 23696098  T
Q  130 gcggatgtgtgtttaagaggccttagatatattgggggcctaaagagaaacacctttattgttgagggtaact 202  Q
     || ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23696099 ccgaatgtgtgtttaagaggcattagatatattggggacctaaagagaaacacctttattgttgagggtaact 23696171  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 254 - 383
Target Start/End: Original strand, 23696211 - 23696340
Alignment:
Q  254 cacatacgtttcacacccatttagtcgttcttcataaacatgaaccatgggaatgggcaaggtctttccaaattcctagattgccattatttagcgttta 353  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23696211 cacatacgtttcatacccatttagtcgttcttcataaacatgaaccatgggaatgggcaaggtctttccaaattcctagattgccattatttagcattta 23696310  T
Q  354 ctagcattcaaattagtaccaattccaaag 383  Q
    ||||||||||||||||||||||| ||||||    
T  23696311 ctagcattcaaattagtaccaataccaaag 23696340  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 23694068 - 23694171
Alignment:
Q  277 gtcgttcttcataaacatgaaccatgggaatgggcaaggtctttccaaattcctagattgccattatttagcgtttactagcattcaaattagtaccaat 376  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||| |||||| | |||||    
T  23694068 gtcgttcttcaaaaacaa-aaccatgggaatgggcaaggtctttccaaattcctagatttccatcatctagcatttactagcatttaaattaattccaat 23694166  T
Q  377 tccaa 381  Q
    |||||    
T  23694167 tccaa 23694171  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 56368745 - 56368644
Alignment:
Q  60 taaatacacattcagtagttatctacctgatgtatgtttgacaaaaaactgtatttctgataaataactagcggatgtgtgtttaagaggccttagatat 159  Q
    ||||||||||| | ||||||||||||   ||||||||||  ||||||| ||||  ||||||| ||||||||||||||||| |||| ||||| ||||| ||    
T  56368745 taaatacacatcctgtagttatctactgaatgtatgtttttcaaaaaattgtacatctgatagataactagcggatgtgtatttatgaggctttagagat 56368646  T
Q  160 at 161  Q
    ||    
T  56368645 at 56368644  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 56369104 - 56369003
Alignment:
Q  60 taaatacacattcagtagttatctacctgatgtatgtttgacaaaaaactgtatttctgataaataactagcggatgtgtgtttaagaggccttagatat 159  Q
    ||||||||||| || |||||||||||   ||||||||||  ||||||| |||   ||||||| ||||||||||||||||| |||| ||||| ||||| ||    
T  56369104 taaatacacatccaatagttatctactgaatgtatgtttttcaaaaaattgtgcatctgatagataactagcggatgtgtatttatgaggctttagagat 56369005  T
Q  160 at 161  Q
    ||    
T  56369004 at 56369003  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 1733515 - 1733467
Alignment:
Q  60 taaatacacattcagtagttatctacctgatgtatgtttgacaaaaaac 108  Q
    ||||||||| |||  |||||||||||| ||||||||||||| |||||||    
T  1733515 taaatacactttcgatagttatctaccggatgtatgtttgataaaaaac 1733467  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 26598178 - 26598057
Alignment:
Q  60 taaatacacattcagtagttatctacctgatgtatgtttgacaaaaaactgtatttctgataaataactagcggatgtgtgtttaagaggccttagatat 159  Q
    ||||||||||| | ||||||||||| |||||||| |||| |||||||| | ||  ||||||| ||||||| ||||||||| |||| | | |||| || ||    
T  26598178 taaatacacatccggtagttatctatctgatgtacgttttacaaaaaaatatacatctgatagataactatcggatgtgtatttaggggaccttggagat 26598079  T
Q  160 attgggggcctaaagagaaacac 182  Q
    | |||| ||||||||| ||||||    
T  26598078 a-tgggagcctaaagaaaaacac 26598057  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 15248336 - 15248384
Alignment:
Q  59 ctaaatacacattcagtagttatctacctgatgtatgtttgacaaaaaa 107  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||    
T  15248336 ctaaatatacattcagtagttatctaccggatatatgtttgataaaaaa 15248384  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 183
Target Start/End: Original strand, 29945065 - 29945187
Alignment:
Q  59 ctaaatacacattcagtagttatctacctgatgtatgtttgacaaaaaactgtatttctgataaataactagcggatgtgtgttta-agaggccttagat 157  Q
    |||||||||| ||  ||||||||||||| ||||||||||||||||| ||  ||   || |||| |||||||  |||||| | |||| ||| ||||||||     
T  29945065 ctaaatacacttttggtagttatctaccagatgtatgtttgacaaataaacgttcatccgatagataactactggatgtctatttagaga-gccttagag 29945163  T
Q  158 atattgggggcctaaagagaaacacc 183  Q
    |||||  |||||||||||||||||||    
T  29945164 atatt--gggcctaaagagaaacacc 29945187  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 9940621 - 9940669
Alignment:
Q  59 ctaaatacacattcagtagttatctacctgatgtatgtttgacaaaaaa 107  Q
    ||||||||| || | ||||||||||||| ||||||| ||||||||||||    
T  9940621 ctaaatacatatccggtagttatctaccggatgtatatttgacaaaaaa 9940669  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 36679453 - 36679397
Alignment:
Q  123 ataactagcggatgtgtgtttaagaggccttagatatattgggggcctaaagagaaa 179  Q
    ||||||| | ||||||| |||| | || |||||| ||||||||||||||||||||||    
T  36679453 ataactatctgatgtgtatttatggggtcttagagatattgggggcctaaagagaaa 36679397  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 36693068 - 36693012
Alignment:
Q  123 ataactagcggatgtgtgtttaagaggccttagatatattgggggcctaaagagaaa 179  Q
    ||||||| | ||||||| |||| | || |||||| ||||||||||||||||||||||    
T  36693068 ataactatctgatgtgtatttatggggtcttagagatattgggggcctaaagagaaa 36693012  T

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